1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc06g083390.4.1

Solyc06g083390.4.1 (RIN4, Solyc06g083390)


Aliases : RIN4, Solyc06g083390

Description : RIN4 effector-triggered immunity RPM1-interacting factor


Gene families : OG0000509 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000509_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g083390.4.1
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
Als_g14198 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33282 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g11220 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g26699 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g70445 NOI not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0111.g045667 RIN4 not classified & original description: CDS=218-763 0.03 OrthoFinder output from all 47 species
Cba_g18024 RIN4 regulatory factor *(RIN4) guarded by RPM1/RPS2... 0.01 OrthoFinder output from all 47 species
Cba_g72840 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G076700.1 RIN4, Ceric.02G076700 regulatory factor *(RIN4) guarded by RPM1/RPS2... 0.06 OrthoFinder output from all 47 species
Ceric.25G039200.1 Ceric.25G039200 not classified & original description: pacid=50593178... 0.04 OrthoFinder output from all 47 species
Dac_g10666 RIN4 regulatory factor *(RIN4) guarded by RPM1/RPS2... 0.02 OrthoFinder output from all 47 species
Dcu_g04716 RIN4 regulatory factor *(RIN4) guarded by RPM1/RPS2... 0.02 OrthoFinder output from all 47 species
Dde_g23501 RIN4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g10233 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g16670 RIN4 regulatory factor *(RIN4) guarded by RPM1/RPS2... 0.03 OrthoFinder output from all 47 species
GSVIVT01004747001 RIN4 External stimuli response.biotic stress.pathogen... 0.06 OrthoFinder output from all 47 species
GSVIVT01020994001 RIN4 External stimuli response.biotic stress.pathogen... 0.01 OrthoFinder output from all 47 species
LOC_Os02g49340.1 LOC_Os02g49340 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os03g63140.1 RIN4, LOC_Os03g63140 RIN4 effector-triggered immunity RPM1-interacting factor 0.03 OrthoFinder output from all 47 species
Len_g17079 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g03850 RIN4 regulatory factor *(RIN4) guarded by RPM1/RPS2... 0.03 OrthoFinder output from all 47 species
Mp1g26110.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g26518 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g39479 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g12776 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g23580 RIN4 regulatory factor *(RIN4) guarded by RPM1/RPS2... 0.03 OrthoFinder output from all 47 species
Ppi_g62336 RIN4 regulatory factor *(RIN4) guarded by RPM1/RPS2... 0.02 OrthoFinder output from all 47 species
Sam_g16131 No alias regulatory factor *(RIN4) guarded by RPM1/RPS2... 0.03 OrthoFinder output from all 47 species
Sam_g40068 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g07888 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g09623 RIN4 regulatory factor *(RIN4) guarded by RPM1/RPS2... 0.03 OrthoFinder output from all 47 species
Spa_g18819 RIN4 regulatory factor *(RIN4) guarded by RPM1/RPS2... 0.01 OrthoFinder output from all 47 species
Tin_g04378 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g23904 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003639_P001 RIN4, Zm00001e003639 RIN4 effector-triggered immunity RPM1-interacting factor 0.03 OrthoFinder output from all 47 species
Zm00001e036855_P001 Zm00001e036855 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004143 diacylglycerol kinase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR008700 TypeIII_avirulence_cleave 181 216
No external refs found!