Solyc06g082760.4.1 (Solyc06g082760)

Aliases : Solyc06g082760

Description : component psRPL17 of large ribosomal subunit proteome

Gene families : OG0002243 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002243_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g082760.4.1
Cluster	HCCA: Cluster_133

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00077p00185050	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.01	OrthoFinder output from all 47 species
AT3G54210	No alias	Ribosomal protein L17 family protein	0.22	OrthoFinder output from all 47 species
Ala_g36982	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Als_g08091	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Als_g32904	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Aop_g05075	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Aspi01Gene18280.t1	Aspi01Gene18280	component *(bL17c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Azfi_s0132.g049286	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Ceric.31G010800.1	Ceric.31G010800	component *(bL17c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Cre02.g108850	No alias	Protein biosynthesis.organelle translation...	0.13	OrthoFinder output from all 47 species
Dac_g01223	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Dcu_g23921	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Dde_g06743	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ehy_g03225	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01037929001	No alias	Protein biosynthesis.organelle translation...	0.1	OrthoFinder output from all 47 species
Gb_36007	No alias	component psRPL17 of large ribosomal subunit proteome	0.15	OrthoFinder output from all 47 species
LOC_Os03g60100.1	LOC_Os03g60100	component psRPL17 of large ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species
Len_g00984	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Lfl_g00441	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
MA_263166g0010	No alias	50S ribosomal protein L17, chloroplastic OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Mp8g05860.1	No alias	component psRPL17 of large ribosomal subunit proteome	0.21	OrthoFinder output from all 47 species
Msp_g20377	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Nbi_g05141	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Ore_g05442	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ore_g31023	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Pir_g36278	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pp3c12_10340V3.1	Pp3c12_10340	Ribosomal protein L17 family protein	0.02	OrthoFinder output from all 47 species
Pp3c13_21730V3.1	Pp3c13_21730	Ribosomal protein L17 family protein	0.04	OrthoFinder output from all 47 species
Pp3c3_12090V3.1	Pp3c3_12090	Ribosomal protein L17 family protein	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g015014	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Sam_g11817	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Spa_g04290	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Spa_g04291	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Spa_g23642	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g03061	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Zm00001e011784_P001	Zm00001e011784	component psRPL17 of large ribosomal subunit proteome	0.22	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004853	uroporphyrinogen decarboxylase activity	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000456	Ribosomal_L17	107	203

External Links

No external refs found!

Solyc06g082760.4.1 (Solyc06g082760)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation