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  5. Solyc06g073810.4.1

Solyc06g073810.4.1 (Solyc06g073810)


Aliases : Solyc06g073810

Description : no hits & (original description: none)


Gene families : OG0004324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g073810.4.1

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01037516001 No alias Cold shock protein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_24061 No alias Cold shock protein 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Lfl_g17175 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp1g13450.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Pir_g20172 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g09786 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e011241_P005 Zm00001e011241 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 285 301
IPR001878 Znf_CCHC 136 153
IPR001878 Znf_CCHC 178 194
No external refs found!