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  5. Solyc06g073280.3.1

Solyc06g073280.3.1 (AGD2, Solyc06g073280)


Aliases : AGD2, Solyc06g073280

Description : LL-diaminopimelate aminotransferase


Gene families : OG0001991 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001991_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g073280.3.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AT4G33680 AGD2 Pyridoxal phosphate (PLP)-dependent transferases... 0.1 OrthoFinder output from all 47 species
Adi_g003304 ALD1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g26927 AGD2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.13G050800.1 AGD2, Ceric.13G050800 LL-diaminopimelate aminotransferase & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020537.26 AGD2 Probable LL-diaminopimelate aminotransferase,... 0.02 OrthoFinder output from all 47 species
Cre17.g734200 AGD2 Amino acid metabolism.biosynthesis.aspartate... 0.03 OrthoFinder output from all 47 species
Dcu_g50793 AGD2 LL-diaminopimelate aminotransferase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g01345 AGD2 LL-diaminopimelate aminotransferase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01036983001 AGD2 Amino acid metabolism.biosynthesis.aspartate... 0.02 OrthoFinder output from all 47 species
Gb_40794 AGD2 LL-diaminopimelate aminotransferase 0.03 OrthoFinder output from all 47 species
LOC_Os03g18810.1 AGD2, LOC_Os03g18810 LL-diaminopimelate aminotransferase 0.04 OrthoFinder output from all 47 species
Mp8g02400.1 AGD2 LL-diaminopimelate aminotransferase 0.09 OrthoFinder output from all 47 species
Nbi_g06161 AGD2 LL-diaminopimelate aminotransferase & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0009058 biosynthetic process IEA Interproscan
MF GO:0030170 pyridoxal phosphate binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004019 adenylosuccinate synthase activity IEP HCCA
MF GO:0004834 tryptophan synthase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
BP GO:0006568 tryptophan metabolic process IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0006586 indolalkylamine metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008837 diaminopimelate epimerase activity IEP HCCA
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP HCCA
MF GO:0016872 intramolecular lyase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP HCCA
BP GO:0042430 indole-containing compound metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0047661 amino-acid racemase activity IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004839 Aminotransferase_I/II 93 456
No external refs found!