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  5. Solyc06g073260.3.1

Solyc06g073260.3.1 (CRB, HIP1.3, CSP41B,...)


Aliases : CRB, HIP1.3, CSP41B, Solyc06g073260

Description : endoribonuclease (CSP41)


Gene families : OG0001864 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001864_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g073260.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00211760 CRB, HIP1.3,... RNA processing.organelle machineries.ribonuclease... 0.17 OrthoFinder output from all 47 species
AMTR_s00025p00246210 CSP41A,... RNA processing.organelle machineries.ribonuclease... 0.12 OrthoFinder output from all 47 species
AT1G09340 CRB, HIP1.3, CSP41B chloroplast RNA binding 0.3 OrthoFinder output from all 47 species
AT3G63140 CSP41A chloroplast stem-loop binding protein of 41 kDa 0.29 OrthoFinder output from all 47 species
Adi_g006651 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.11 OrthoFinder output from all 47 species
Adi_g020154 CSP41A endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
Adi_g044321 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g02158 CSP41A endoribonuclease *(CSP41) & original description: none 0.12 OrthoFinder output from all 47 species
Aev_g03824 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.11 OrthoFinder output from all 47 species
Ala_g04885 CSP41A endoribonuclease *(CSP41) & original description: none 0.12 OrthoFinder output from all 47 species
Ala_g12109 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.12 OrthoFinder output from all 47 species
Als_g12366 CSP41A endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Als_g45562 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.15 OrthoFinder output from all 47 species
Aob_g01615 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g11448 CSP41A endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g13529 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.14 OrthoFinder output from all 47 species
Aop_g69969 CSP41A endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene42964.t1 CRB, HIP1.3,... endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene42964.t2 CRB, HIP1.3,... endoribonuclease *(CSP41) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene58991.t1 CSP41A, Aspi01Gene58991 endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0699.g082607 CSP41A endoribonuclease *(CSP41) & original description: CDS=152-1396 0.05 OrthoFinder output from all 47 species
Azfi_s0754.g085340 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: CDS=1-1245 0.08 OrthoFinder output from all 47 species
Azfi_s1450.g103210 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: CDS=130-1254 0.07 OrthoFinder output from all 47 species
Cba_g10854 CSP41A endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Cba_g10933 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.12 OrthoFinder output from all 47 species
Ceric.11G048000.1 CRB, HIP1.3,... endoribonuclease *(CSP41) & original description:... 0.19 OrthoFinder output from all 47 species
Ceric.26G018800.1 CSP41A, Ceric.26G018800 endoribonuclease *(CSP41) & original description:... 0.13 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021181.14 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021720.14 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.04 OrthoFinder output from all 47 species
Cre10.g435800 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.06 OrthoFinder output from all 47 species
Cre10.g440050 CSP41A RNA processing.organelle machineries.ribonuclease... 0.15 OrthoFinder output from all 47 species
Dac_g08562 CSP41A endoribonuclease *(CSP41) & original description: none 0.15 OrthoFinder output from all 47 species
Dac_g14747 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Dcu_g01117 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Dcu_g02729 CSP41A endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Dde_g02854 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.16 OrthoFinder output from all 47 species
Dde_g14746 CSP41A endoribonuclease *(CSP41) & original description: none 0.11 OrthoFinder output from all 47 species
Ehy_g01176 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g06718 CSP41A endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
GSVIVT01011082001 CSP41A RNA processing.organelle machineries.ribonuclease... 0.21 OrthoFinder output from all 47 species
GSVIVT01031272001 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.2 OrthoFinder output from all 47 species
Gb_01706 CSP41A endoribonuclease (CSP41) 0.12 OrthoFinder output from all 47 species
Gb_26565 CRB, HIP1.3, CSP41B endoribonuclease (CSP41) 0.14 OrthoFinder output from all 47 species
Gb_37146 CSP41A Chloroplast stem-loop binding protein of 41 kDa a,... 0.07 OrthoFinder output from all 47 species
LOC_Os07g11110.1 CSP41A, LOC_Os07g11110 endoribonuclease (CSP41) 0.1 OrthoFinder output from all 47 species
LOC_Os12g23180.1 CRB, HIP1.3,... endoribonuclease (CSP41) 0.19 OrthoFinder output from all 47 species
Len_g03236 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.16 OrthoFinder output from all 47 species
Len_g13543 CSP41A endoribonuclease *(CSP41) & original description: none 0.17 OrthoFinder output from all 47 species
Lfl_g01195 CSP41A endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Lfl_g12178 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.09 OrthoFinder output from all 47 species
MA_115470g0010 CSP41A Chloroplast stem-loop binding protein of 41 kDa a,... 0.1 OrthoFinder output from all 47 species
MA_196108g0010 CRB, HIP1.3, CSP41B endoribonuclease (CSP41) 0.08 OrthoFinder output from all 47 species
MA_307070g0010 CSP41A endoribonuclease (CSP41) 0.09 OrthoFinder output from all 47 species
MA_327596g0010 CRB, HIP1.3, CSP41B no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp1g11680.1 CRB, HIP1.3, CSP41B endoribonuclease (CSP41) 0.2 OrthoFinder output from all 47 species
Mp1g11690.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp6g11330.1 CSP41A endoribonuclease (CSP41) 0.15 OrthoFinder output from all 47 species
Msp_g23904 CSP41A endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g36515 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.14 OrthoFinder output from all 47 species
Nbi_g04194 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.15 OrthoFinder output from all 47 species
Nbi_g07510 CSP41A endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Ore_g07930 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Ore_g19880 CSP41A endoribonuclease *(CSP41) & original description: none 0.12 OrthoFinder output from all 47 species
Ore_g31893 CSP41A endoribonuclease *(CSP41) & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g14125 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Pir_g14134 CSP41A endoribonuclease *(CSP41) & original description: none 0.12 OrthoFinder output from all 47 species
Pnu_g10254 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.11 OrthoFinder output from all 47 species
Pnu_g13713 CSP41A endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g01983 CSP41A endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g10001 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Sacu_v1.1_s0076.g017534 CSP41A endoribonuclease *(CSP41) & original description: CDS=1450-2700 0.04 OrthoFinder output from all 47 species
Sam_g04675 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Sam_g11377 No alias endoribonuclease *(CSP41) & original description: none 0.12 OrthoFinder output from all 47 species
Sam_g19736 No alias endoribonuclease *(CSP41) & original description: none 0.11 OrthoFinder output from all 47 species
Sam_g22990 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Smo107618 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.09 OrthoFinder output from all 47 species
Smo133157 CSP41A RNA processing.organelle machineries.ribonuclease... 0.05 OrthoFinder output from all 47 species
Smo185868 CSP41A RNA processing.organelle machineries.ribonuclease... 0.06 OrthoFinder output from all 47 species
Smo228849 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.02 OrthoFinder output from all 47 species
Spa_g10009 CSP41A endoribonuclease *(CSP41) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g12780 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.11 OrthoFinder output from all 47 species
Tin_g00898 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g08097 CSP41A endoribonuclease *(CSP41) & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e029297_P001 CRB, HIP1.3,... endoribonuclease (CSP41) 0.15 OrthoFinder output from all 47 species
Zm00001e033112_P001 CSP41A, Zm00001e033112 endoribonuclease (CSP41) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004618 phosphoglycerate kinase activity IEP HCCA
MF GO:0004807 triose-phosphate isomerase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006536 glutamate metabolic process IEP HCCA
BP GO:0006537 glutamate biosynthetic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015930 glutamate synthase activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0043650 dicarboxylic acid biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001509 Epimerase_deHydtase 56 273
No external refs found!