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  5. Solyc06g071610.3.1

Solyc06g071610.3.1 (Solyc06g071610)


Aliases : Solyc06g071610

Description : Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana (sp|a2rvm0|tic32_arath : 217.0)


Gene families : OG0000190 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000190_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g071610.3.1
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00077460 evm_27.TU.AmTr_v1... Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum 0.03 OrthoFinder output from all 47 species
AMTR_s00085p00054430 evm_27.TU.AmTr_v1... Short-chain dehydrogenase TIC 32, chloroplastic... 0.03 OrthoFinder output from all 47 species
AT5G50130 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.07 OrthoFinder output from all 47 species
Aev_g21575 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g25480 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g18635 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0310.g064128 No alias not classified & original description: CDS=310-1077 0.02 OrthoFinder output from all 47 species
Azfi_s0419.g069131 No alias not classified & original description: CDS=35-1039 0.03 OrthoFinder output from all 47 species
Cba_g00794 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G007800.1 Ceric.07G007800 not classified & original description: pacid=50627820... 0.04 OrthoFinder output from all 47 species
Dcu_g44569 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g46056 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g50051 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007686001 No alias Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum 0.02 OrthoFinder output from all 47 species
LOC_Os03g02460.1 LOC_Os03g02460 Short-chain dehydrogenase TIC 32, chloroplastic... 0.02 OrthoFinder output from all 47 species
LOC_Os10g40020.3 LOC_Os10g40020 Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum... 0.02 OrthoFinder output from all 47 species
Lfl_g04488 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_61875g0010 No alias Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum... 0.02 OrthoFinder output from all 47 species
Ppi_g42499 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g15633 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g46897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e036623_P001 Zm00001e036623 Short-chain dehydrogenase TIC 32, chloroplastic... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR002347 SDR_fam 39 174
No external refs found!