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  5. Solyc06g071020.3.1

Solyc06g071020.3.1 (Solyc06g071020)


Aliases : Solyc06g071020

Description : pectate lyase


Gene families : OG0000492 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000492_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Solyc06g071020.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00123190 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.09 OrthoFinder output from all 47 species
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.07 OrthoFinder output from all 47 species
AT1G14420 AT59 Pectate lyase family protein 0.09 OrthoFinder output from all 47 species
AT2G02720 No alias Pectate lyase family protein 0.08 OrthoFinder output from all 47 species
AT3G01270 No alias Pectate lyase family protein 0.03 OrthoFinder output from all 47 species
AT5G09280 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G15110 No alias Pectate lyase family protein 0.06 OrthoFinder output from all 47 species
Azfi_s0123.g048430 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=163-1392 0.04 OrthoFinder output from all 47 species
GSVIVT01008053001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.07 OrthoFinder output from all 47 species
GSVIVT01011348001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 OrthoFinder output from all 47 species
GSVIVT01020067001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.09 OrthoFinder output from all 47 species
GSVIVT01020068001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.1 OrthoFinder output from all 47 species
Gb_19802 No alias pectate lyase 0.04 OrthoFinder output from all 47 species
LOC_Os02g12300.1 AT59, LOC_Os02g12300 pectate lyase 0.04 OrthoFinder output from all 47 species
LOC_Os04g05050.1 LOC_Os04g05050 pectate lyase 0.02 OrthoFinder output from all 47 species
LOC_Os06g05209.1 LOC_Os06g05209 pectate lyase 0.08 OrthoFinder output from all 47 species
LOC_Os06g05260.1 LOC_Os06g05260 pectate lyase 0.07 OrthoFinder output from all 47 species
LOC_Os06g38510.2 LOC_Os06g38510 pectate lyase 0.03 OrthoFinder output from all 47 species
MA_10437227g0030 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
Mp8g10190.1 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
Ore_g41450 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g058910.3.1 AT59, Solyc03g058910 pectate lyase 0.07 OrthoFinder output from all 47 species
Solyc05g007080.4.1 AT59, Solyc05g007080 pectate lyase 0.09 OrthoFinder output from all 47 species
Zm00001e024959_P001 AT59, Zm00001e024959 pectate lyase 0.05 OrthoFinder output from all 47 species
Zm00001e037311_P001 Zm00001e037311 pectate lyase 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007524 Pec_lyase_N 24 76
IPR002022 Pec_lyase 187 352
No external refs found!