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  5. Solyc06g070960.3.1

Solyc06g070960.3.1 (ATH1, ATATH1, ABCA2,...)


Aliases : ATH1, ATATH1, ABCA2, Solyc06g070960

Description : fatty acid transporter (ABCA). subfamily ABCA transporter


Gene families : OG0001787 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001787_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g070960.3.1
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AT5G61690 ATH15, ATATH15 ABC2 homolog 15 0.03 OrthoFinder output from all 47 species
AT5G61730 ATH11, ATATH11 ABC2 homolog 11 0.05 OrthoFinder output from all 47 species
Ala_g07489 ATH1, ATATH1, ABCA2 subfamily ABCA transporter & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0022.g016230 ATH1, ATATH1, ABCA2 subfamily ABCA transporter & original description: CDS=354-3422 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000057.66 ATH1, ATATH1, ABCA2 ABC transporter A family member 2 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
GSVIVT01008042001 ATH1, ATATH1, ABCA2 Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
Msp_g36286 ATH15, ATATH15 subfamily ABCA transporter & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010133 ATH1, ATATH1, ABCA2 not classified & original description: CDS=111-2057 0.02 OrthoFinder output from all 47 species
Smo76005 ATH1, ATATH1, ABCA2 Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
Solyc03g113070.4.1 ATH1, ATATH1,... fatty acid transporter (ABCA). subfamily ABCA transporter 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 533 675
No external refs found!