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  5. Solyc06g069780.4.1

Solyc06g069780.4.1 (Solyc06g069780)


Aliases : Solyc06g069780

Description : RING-v-class E3 ligase


Gene families : OG0000370 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g069780.4.1

Target Alias Description ECC score Gene Family Method Actions
AT3G47550 No alias RING/FYVE/PHD zinc finger superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G02075 PIT1 RING/FYVE/PHD zinc finger superfamily protein 0.07 OrthoFinder output from all 47 species
Als_g46783 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21088 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0052.g031639 No alias E3 ubiquitin ligase & original description: CDS=1-1089 0.02 OrthoFinder output from all 47 species
Cba_g00910 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05081 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G099300.1 Ceric.03G099300 E3 ubiquitin ligase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.11G023000.1 Ceric.11G023000 E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.16G007100.1 Ceric.16G007100 E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.25G031600.1 Ceric.25G031600 E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g16641 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03386 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01030910001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Gb_37740 No alias RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os11g38800.1 LOC_Os11g38800 RING-v-class E3 ligase 0.04 OrthoFinder output from all 47 species
Len_g08617 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g08250 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11851 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000908 No alias E3 ubiquitin ligase & original description: CDS=1-1032 0.03 OrthoFinder output from all 47 species
Sam_g50720 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g079530.4.1 Solyc01g079530 RING-v-class E3 ligase 0.04 OrthoFinder output from all 47 species
Spa_g30245 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10556 No alias E3 ubiquiTin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e028572_P001 Zm00001e028572 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR022143 DUF3675 119 237
IPR011016 Znf_RING-CH 68 113
No external refs found!