Solyc06g068040.3.1 (Solyc06g068040)

Aliases : Solyc06g068040

Description : Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana (sp|q94aj5|pglr5_arath : 461.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 200.4)

Gene families : OG0000452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g068040.3.1
Cluster	HCCA: Cluster_75

Target	Alias	Description	ECC score	Gene Family Method
AT4G01890	No alias	Pectin lyase-like superfamily protein	0.03	OrthoFinder output from all 47 species
AT4G35670	No alias	Pectin lyase-like superfamily protein	0.03	OrthoFinder output from all 47 species
GSVIVT01013771001	No alias	Polygalacturonase At1g48100 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01013800001	No alias	Cell wall.pectin.modification and...	0.04	OrthoFinder output from all 47 species
GSVIVT01017644001	No alias	Polygalacturonase At1g48100 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01028189001	No alias	Polygalacturonase At1g48100 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
GSVIVT01031298001	No alias	Polygalacturonase At1g48100 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01032114001	QRT2	Polygalacturonase OS=Actinidia deliciosa	0.02	OrthoFinder output from all 47 species
Gb_07779	No alias	Polygalacturonase OS=Actinidia deliciosa...	0.03	OrthoFinder output from all 47 species
LOC_Os05g46520.1	LOC_Os05g46520	Probable polygalacturonase At1g80170 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
LOC_Os05g50260.1	LOC_Os05g50260	Polygalacturonase At1g48100 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Zm00001e016759_P001	Zm00001e016759	Polygalacturonase QRT2 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0031968	organelle outer membrane	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	76	399

External Links

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Solyc06g068040.3.1 (Solyc06g068040)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation