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  5. Solyc06g064580.2.1

Solyc06g064580.2.1 (Solyc06g064580)


Aliases : Solyc06g064580

Description : transcription factor (bHLH). bHLH-IVa-class iron homeostasis regulator


Gene families : OG0001148 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001148_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g064580.2.1
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AT2G22770 NAI1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g01447 No alias bHLH-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g11731 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene67830.t1 Aspi01Gene67830 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01004409001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
Gb_13728 No alias transcription factor (bHLH). bHLH-IVa-class iron... 0.03 OrthoFinder output from all 47 species
LOC_Os03g12760.1 LOC_Os03g12760 transcription factor (bHLH). bHLH-IVa-class iron... 0.02 OrthoFinder output from all 47 species
LOC_Os03g46860.1 LOC_Os03g46860 transcription factor (bHLH). bHLH-IVa-class iron... 0.03 OrthoFinder output from all 47 species
LOC_Os03g51580.1 LOC_Os03g51580 transcription factor (bHLH). bHLH-IVa-class iron... 0.02 OrthoFinder output from all 47 species
LOC_Os12g43620.1 LOC_Os12g43620 transcription factor (bHLH). bHLH-IVa-class iron... 0.02 OrthoFinder output from all 47 species
Len_g32880 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g48784 NAI1 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g05642 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g31815 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g23333 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000935_P001 Zm00001e000935 transcription factor (bHLH). bHLH-IVa-class iron... 0.02 OrthoFinder output from all 47 species
Zm00001e002570_P001 Zm00001e002570 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e003314_P001 Zm00001e003314 transcription factor (bHLH). bHLH-IVa-class iron... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0016151 nickel cation binding IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 118 165
No external refs found!