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  5. Solyc06g059970.4.1

Solyc06g059970.4.1 (PI, Solyc06g059970)


Aliases : PI, Solyc06g059970

Description : transcription factor (MADS/AGL)


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g059970.4.1
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00114420 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AMTR_s00066p00109320 AP3, ATAP3,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AMTR_s00071p00198970 XAL1, AGL12,... RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
AMTR_s00089p00081270 PI,... RNA biosynthesis.transcriptional activation.MADS box... 0.06 OrthoFinder output from all 47 species
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.07 OrthoFinder output from all 47 species
AT1G26310 AGL10, CAL1, CAL K-box region and MADS-box transcription factor family protein 0.02 OrthoFinder output from all 47 species
AT1G69120 AGL7, AP1 K-box region and MADS-box transcription factor family protein 0.07 OrthoFinder output from all 47 species
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.04 OrthoFinder output from all 47 species
AT2G45650 AGL6 AGAMOUS-like 6 0.04 OrthoFinder output from all 47 species
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.07 OrthoFinder output from all 47 species
AT4G24540 AGL24 AGAMOUS-like 24 0.04 OrthoFinder output from all 47 species
AT5G15800 AGL2, SEP1 K-box region and MADS-box transcription factor family protein 0.08 OrthoFinder output from all 47 species
AT5G20240 PI K-box region and MADS-box transcription factor family protein 0.05 OrthoFinder output from all 47 species
AT5G60910 AGL8, FUL AGAMOUS-like 8 0.09 OrthoFinder output from all 47 species
Adi_g001519 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20345 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04227 AGL18 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27230 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g32548 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene15820.t1 SOC1, AGL20,... MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene68989.t2 SOC1, AGL20,... MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0009.g011735 STK, AGL11 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0009.g011788 XAL1, AGL12 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g16031 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.07G004300.1 AGL10, CAL1,... not classified & original description: pacid=50627317... 0.03 OrthoFinder output from all 47 species
Ceric.07G094900.1 AGL7, AP1,... MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.12G051800.1 GL19, AGL19,... MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dac_g08553 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g10173 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09712 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01010221001 AGL62 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01010521001 AGL9, SEP3 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01014093001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 OrthoFinder output from all 47 species
GSVIVT01018450001 AGL6 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01036551001 AGL2, SEP1 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01038474001 AGL16 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
Gb_03806 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_03807 AGL16 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Gb_12586 AGL61, DIA transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Gb_15398 PI transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Gb_19897 AGL16 MADS-box transcription factor 27 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
Gb_41550 No alias transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
LOC_Os01g66030.1 PI, LOC_Os01g66030 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os03g08754.1 SVP, AGL22,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os03g54170.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os07g01820.1 AGL7, AP1, LOC_Os07g01820 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Len_g43702 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g14037 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g36451 AGL6 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g37453 AGL6 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g40583 AGL6 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g40743 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_126898g0010 AGL71 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_16629g0010 ANR1, AGL44 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_5917g0010 AGL9, SEP3 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_6544g0010 STK, AGL11 Floral homeotic protein AGAMOUS OS=Panax ginseng... 0.03 OrthoFinder output from all 47 species
MA_78010g0010 SHP2, AGL5 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_9544285g0010 AGL42 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_9841429g0010 AGL9, SEP3 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Msp_g39561 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g02784 AGL6 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11366 AGL3, SEP4 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g24288 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c16_19170V3.1 AGL61, DIA, Pp3c16_19170 AGAMOUS-like 61 0.01 OrthoFinder output from all 47 species
Ppi_g04968 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g08987 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g10850 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g11923 AGL21 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001705 AGL32, TT16, ABS MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012229 No alias not classified & original description: CDS=2-607 0.02 OrthoFinder output from all 47 species
Sam_g06487 No alias MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26914 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g30262 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo121275 AGL7, AP1 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
Solyc01g080785.1.1 AGL61, DIA,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Solyc01g106710.1.1 AGL62, Solyc01g106710 component MED19 of head module of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Solyc02g089210.4.1 AGL7, AP1, Solyc02g089210 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Solyc03g019710.3.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Spa_g28690 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g29715 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g31312 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g11248 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003667_P001 AGL9, SEP3,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e003670_P002 AGL79, Zm00001e003670 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e005705_P004 AGL7, AP1, Zm00001e005705 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e005708_P002 AGL2, SEP1,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e010125_P001 AGL9, SEP3,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e012024_P001 AGL4, SEP2,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e012026_P002 AGL7, AP1, Zm00001e012026 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e015924_P003 SVP, AGL22,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e023236_P005 AGL6, Zm00001e023236 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e027031_P001 PI, Zm00001e027031 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e027034_P001 PI, Zm00001e027034 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e030373_P001 AGL10, CAL1,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e034629_P001 AGL9, SEP3,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e036159_P001 AGL24, Zm00001e036159 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004866 endopeptidase inhibitor activity IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
MF GO:0016744 transketolase or transaldolase activity IEP HCCA
MF GO:0030414 peptidase inhibitor activity IEP HCCA
MF GO:0061134 peptidase regulator activity IEP HCCA
MF GO:0061135 endopeptidase regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
IPR002487 TF_Kbox 83 163
No external refs found!