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  5. Solyc06g054020.3.1

Solyc06g054020.3.1 (SDE3, Solyc06g054020)


Aliases : SDE3, Solyc06g054020

Description : Probable RNA helicase SDE3 OS=Arabidopsis thaliana (sp|q8gyd9|sde3_arath : 1043.0)


Gene families : OG0004014 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g054020.3.1
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00272090 SDE3,... Probable RNA helicase SDE3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G05460 SDE3 P-loop containing nucleoside triphosphate hydrolases... 0.04 OrthoFinder output from all 47 species
Dcu_g19784 SDE3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01018011001 SDE3 Probable RNA helicase SDE3 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
Gb_16361 SDE3 Probable RNA helicase SDE3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Gb_16363 SDE3 Probable RNA helicase SDE3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os03g06440.2 SDE3, LOC_Os03g06440 Probable RNA helicase SDE3 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Len_g17369 SDE3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29653 SDE3 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR041679 DNA2/NAM7-like_C 600 803
IPR041677 DNA2/NAM7_AAA_11 404 497
IPR041677 DNA2/NAM7_AAA_11 520 592
No external refs found!