Solyc06g051960.3.1 (Solyc06g051960)

Aliases : Solyc06g051960

Description : pectin methylesterase

Gene families : OG0000147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000147_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g051960.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00129p00033080	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
AMTR_s00129p00036660	evm_27.TU.AmTr_v1...	Probable pectinesterase/pectinesterase inhibitor 12...	0.03	OrthoFinder output from all 47 species
AT2G43050	ATPMEPCRD	Plant invertase/pectin methylesterase inhibitor superfamily	0.06	OrthoFinder output from all 47 species
AT3G47400	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.02	OrthoFinder output from all 47 species
AT3G59010	PME61	pectin methylesterase 61	0.03	OrthoFinder output from all 47 species
AT5G09760	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	OrthoFinder output from all 47 species
AT5G51500	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.02	OrthoFinder output from all 47 species
Adi_g006880	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Aop_g11322	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.05	OrthoFinder output from all 47 species
Aspi01Gene11209.t1	Aspi01Gene11209	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0113.g045942	ATPMEPCRF, PMEPCRF	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0215.g058412	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Ceric.16G076000.1	PME44, ATPME44,...	EC_3.1 hydrolase acting on ester bond & original...	0.04	OrthoFinder output from all 47 species
Ceric.30G016400.1	ATPMEPCRF,...	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Dac_g15947	ATPME2, PME2	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Dcu_g51187	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Ehy_g02809	ATPMEPCRF, PMEPCRF	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Ehy_g03889	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Ehy_g04854	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Ehy_g07748	ATPME3, PME3	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Ehy_g08496	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Ehy_g26672	ATPME3, PME3	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Ehy_g27713	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01027653001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.04	OrthoFinder output from all 47 species
GSVIVT01031667001	PME61	Cell wall.pectin.homogalacturonan.modification and...	0.02	OrthoFinder output from all 47 species
Gb_38211	ATPMEPCRA, PMEPCRA	pectin methylesterase	0.03	OrthoFinder output from all 47 species
LOC_Os01g20980.1	ATPMEPCRB, LOC_Os01g20980	pectin methylesterase	0.05	OrthoFinder output from all 47 species
LOC_Os01g65790.1	LOC_Os01g65790	pectin methylesterase	0.03	OrthoFinder output from all 47 species
LOC_Os02g54190.1	PME61, LOC_Os02g54190	pectin methylesterase	0.03	OrthoFinder output from all 47 species
LOC_Os07g47830.1	ATPME3, PME3,...	pectin methylesterase	0.04	OrthoFinder output from all 47 species
Msp_g16008	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Nbi_g30102	ATPME2, PME2	EC_3.1 hydrolase acting on ester bond & original...	0.04	OrthoFinder output from all 47 species
Pp3c8_3840V3.1	Pp3c8_3840	Plant invertase/pectin methylesterase inhibitor superfamily	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0086.g018433	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0119.g021277	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Solyc02g014300.2.1	Solyc02g014300	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Solyc03g083840.3.1	Solyc03g083840	pectin methylesterase	0.02	OrthoFinder output from all 47 species
Solyc03g083870.4.1	Solyc03g083870	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Solyc06g009180.3.1	Solyc06g009180	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Zm00001e011069_P001	PME61, Zm00001e011069	pectin methylesterase	0.04	OrthoFinder output from all 47 species
Zm00001e022184_P001	PME44, ATPME44,...	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Zm00001e026790_P001	ATPMEPCRB, Zm00001e026790	pectin methylesterase	0.02	OrthoFinder output from all 47 species
Zm00001e035838_P001	Zm00001e035838	pectin methylesterase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004857	enzyme inhibitor activity	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	Interproscan
BP	GO:0042545	cell wall modification	IEA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
MF	GO:0140678	molecular function inhibitor activity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004560	alpha-L-fucosidase activity	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
MF	GO:0015928	fucosidase activity	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	281	578
IPR006501	Pectinesterase_inhib_dom	76	225

External Links

No external refs found!

Solyc06g051960.3.1 (Solyc06g051960)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation