Solyc06g051810.4.1 (RDM12, IDN2, Solyc06g051810)

Aliases : RDM12, IDN2, Solyc06g051810

Description : IDN/IDP regulatory protein of DNA methylation pathway

Gene families : OG0002563 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002563_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g051810.4.1
Cluster	HCCA: Cluster_74

Target	Alias	Description	ECC score	Gene Family Method
AT1G80790	No alias	XH/XS domain-containing protein	0.05	OrthoFinder output from all 47 species
AT3G12550	No alias	XH/XS domain-containing protein	0.04	OrthoFinder output from all 47 species
AT3G48670	RDM12, IDN2	XH/XS domain-containing protein	0.03	OrthoFinder output from all 47 species
GSVIVT01010889001	No alias	Chromatin organisation.DNA methylation.canonical...	0.06	OrthoFinder output from all 47 species
LOC_Os01g05470.1	LOC_Os01g05470	IDN/IDP regulatory protein of DNA methylation pathway	0.08	OrthoFinder output from all 47 species
LOC_Os01g44230.1	RDM12, IDN2,...	IDN/IDP regulatory protein of DNA methylation pathway	0.05	OrthoFinder output from all 47 species
Pir_g21900	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g01972	RDM12, IDN2	regulatory protein of DNA methylation pathway *(IDN/IDP)...	0.04	OrthoFinder output from all 47 species
Zm00001e016919_P001	Zm00001e016919	IDN/IDP regulatory protein of DNA methylation pathway	0.09	OrthoFinder output from all 47 species
Zm00001e020386_P003	RDM12, IDN2,...	IDN/IDP regulatory protein of DNA methylation pathway	0.09	OrthoFinder output from all 47 species
Zm00001e025803_P001	Zm00001e025803	IDN/IDP regulatory protein of DNA methylation pathway	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031047	RNA-mediated gene silencing	IEA	Interproscan
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005381	Znf-XS_domain	43	86
IPR005379	FDM1-5/IDN2_XH	507	634
IPR005380	XS_domain	119	229

External Links

No external refs found!