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  5. Solyc06g018110.3.1

Solyc06g018110.3.1 (PHIP1, Solyc06g018110)


Aliases : PHIP1, Solyc06g018110

Description : no hits & (original description: none)


Gene families : OG0002968 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002968_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g018110.3.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AT3G55340 PHIP1 phragmoplastin interacting protein 1 0.1 OrthoFinder output from all 47 species
Aev_g16133 PHIP1 phragmoplastin-interacting factor *(PHIP1) & original... 0.02 OrthoFinder output from all 47 species
Aob_g05162 PHIP1 phragmoplastin-interacting factor *(PHIP1) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene55540.t1 Aspi01Gene55540 phragmoplastin-interacting factor *(PHIP1) & original... 0.03 OrthoFinder output from all 47 species
Cre10.g466450 No alias No description available 0.08 OrthoFinder output from all 47 species
Ehy_g18046 ATU2AF65A phragmoplastin-interacting factor *(PHIP1) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01016604001 PHIP1 No description available 0.02 OrthoFinder output from all 47 species
Gb_35169 PHIP1 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
LOC_Os03g03140.1 PHIP1, LOC_Os03g03140 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os05g02400.1 PHIP1, LOC_Os05g02400 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp3g24090.1 PHIP1 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.07 OrthoFinder output from all 47 species
Nbi_g36365 PHIP1 phragmoplastin-interacting factor *(PHIP1) & original... 0.03 OrthoFinder output from all 47 species
Ore_g07623 PAB2, PABP2, ATPAB2 phragmoplastin-interacting factor *(PHIP1) & original... 0.03 OrthoFinder output from all 47 species
Pir_g18421 PHIP1 phragmoplastin-interacting factor *(PHIP1) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e000171_P001 PHIP1, Zm00001e000171 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e029603_P002 PHIP1, Zm00001e029603 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 309 326
IPR000504 RRM_dom 103 170
IPR000504 RRM_dom 198 266
No external refs found!