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  5. Solyc06g010240.3.1

Solyc06g010240.3.1 (MOM1, MOM, Solyc06g010240)


Aliases : MOM1, MOM, Solyc06g010240

Description : Helicase protein MOM1 OS=Arabidopsis thaliana (sp|q9m658|mom1_arath : 356.0)


Gene families : OG0004810 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004810_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g010240.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00148p00090060 MOM1, MOM,... Helicase protein MOM1 OS=Arabidopsis thaliana 0.12 OrthoFinder output from all 47 species
AT1G08060 MOM1, MOM ATP-dependent helicase family protein 0.14 OrthoFinder output from all 47 species
Adi_g086251 PKL, GYM, CHR6,... DNA helicase *(MOM1) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g25806 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g02731 CHR5 DNA helicase *(MOM1) & original description: none 0.09 OrthoFinder output from all 47 species
Als_g33419 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g14006 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene51090.t1 PKR1, CHR4,... DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G083100.1 PKL, GYM, CHR6,... DNA helicase *(MOM1) & original description:... 0.06 OrthoFinder output from all 47 species
Dac_g20551 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g15932 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25172 PKL, GYM, CHR6,... DNA helicase *(MOM1) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01025216001 MOM1, MOM Helicase protein MOM1 OS=Arabidopsis thaliana 0.1 OrthoFinder output from all 47 species
Gb_01673 PKR1, CHR4 Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
LOC_Os02g02050.1 MOM1, MOM, LOC_Os02g02050 Helicase protein MOM1 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
LOC_Os06g01320.1 MOM1, MOM, LOC_Os06g01320 Helicase protein MOM1 OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species
Len_g57128 MOM1, MOM DNA helicase *(MOM1) & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g07857 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.1 OrthoFinder output from all 47 species
MA_9572741g0010 ATMBD9, MBD9 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Msp_g13654 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g10244 CHR5 DNA helicase *(MOM1) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g25097 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g62119 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g58376 MOM1, MOM DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27616 No alias DNA helicase *(MOM1) & original description: none 0.05 OrthoFinder output from all 47 species
Smo440558 PKL, GYM, CHR6,... Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Spa_g07008 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.08 OrthoFinder output from all 47 species
Zm00001e036737_P001 MOM1, MOM, Zm00001e036737 Helicase protein MOM1 OS=Arabidopsis thaliana... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030623 U5 snRNA binding IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR000330 SNF2_N 805 936
IPR001650 Helicase_C 1056 1167
IPR019787 Znf_PHD-finger 535 581
IPR023780 Chromo_domain 595 651
No external refs found!