Solyc06g009790.4.1 (Solyc06g009790)

Aliases : Solyc06g009790

Description : Probable polygalacturonase OS=Vitis vinifera (sp|a7pzl3|pglr_vitvi : 435.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 45.5)

Gene families : OG0000312 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000312_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g009790.4.1
Cluster	HCCA: Cluster_86

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00141260	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.02	OrthoFinder output from all 47 species
AMTR_s00045p00118570	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.02	OrthoFinder output from all 47 species
AMTR_s00107p00122980	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.02	OrthoFinder output from all 47 species
AT1G19170	No alias	Pectin lyase-like superfamily protein	0.03	OrthoFinder output from all 47 species
AT3G06770	No alias	Pectin lyase-like superfamily protein	0.04	OrthoFinder output from all 47 species
AT5G41870	No alias	Pectin lyase-like superfamily protein	0.03	OrthoFinder output from all 47 species
Adi_g110576	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g24119	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g32626	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g43887	No alias	EC_3.2 glycosylase & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g18890	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g11539	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g11182	No alias	EC_3.2 glycosylase & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g11321	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene04011.t1	Aspi01Gene04011	EC_3.2 glycosylase & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene23222.t1	Aspi01Gene23222	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene29551.t1	Aspi01Gene29551	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.09G023500.1	Ceric.09G023500	EC_3.2 glycosylase & original description:...	0.03	OrthoFinder output from all 47 species
Dde_g11610	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g04582	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g07520	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g07611	No alias	EC_3.2 glycosylase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g08388	No alias	EC_3.2 glycosylase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g10127	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g10515	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g13296	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g14122	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g15261	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g17286	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01015044001	No alias	Probable polygalacturonase OS=Vitis vinifera	0.03	OrthoFinder output from all 47 species
GSVIVT01019405001	No alias	Probable polygalacturonase OS=Vitis vinifera	0.02	OrthoFinder output from all 47 species
GSVIVT01028057001	No alias	Probable polygalacturonase OS=Vitis vinifera	0.01	OrthoFinder output from all 47 species
GSVIVT01028246001	No alias	Probable polygalacturonase OS=Vitis vinifera	0.12	OrthoFinder output from all 47 species
Gb_06212	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	OrthoFinder output from all 47 species
Gb_23151	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	OrthoFinder output from all 47 species
Gb_23153	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	OrthoFinder output from all 47 species
Gb_39001	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.06	OrthoFinder output from all 47 species
LOC_Os02g15690.1	LOC_Os02g15690	Probable polygalacturonase OS=Vitis vinifera...	0.04	OrthoFinder output from all 47 species
LOC_Os02g54030.1	LOC_Os02g54030	Probable polygalacturonase OS=Vitis vinifera...	0.02	OrthoFinder output from all 47 species
LOC_Os03g61800.2	LOC_Os03g61800	Probable polygalacturonase OS=Vitis vinifera...	0.05	OrthoFinder output from all 47 species
LOC_Os05g50960.1	LOC_Os05g50960	Probable polygalacturonase OS=Vitis vinifera...	0.04	OrthoFinder output from all 47 species
LOC_Os12g36810.1	LOC_Os12g36810	Probable polygalacturonase OS=Vitis vinifera...	0.02	OrthoFinder output from all 47 species
Lfl_g38310	No alias	EC_3.2 glycosylase & original description: none	0.03	OrthoFinder output from all 47 species
MA_10430135g0020	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.04	OrthoFinder output from all 47 species
Msp_g06926	No alias	EC_3.2 glycosylase & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g08216	No alias	EC_3.2 glycosylase & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g31187	No alias	EC_3.2 glycosylase & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g40127	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g03906	No alias	EC_3.2 glycosylase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g06397	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g18897	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g16806	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g10961	No alias	EC_3.2 glycosylase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g48471	No alias	EC_3.2 glycosylase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g61919	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007744	No alias	EC_3.2 glycosylase & original description: CDS=819-1838	0.02	OrthoFinder output from all 47 species
Sam_g25453	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g49019	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Solyc07g042160.3.1	Solyc07g042160	Probable polygalacturonase OS=Vitis vinifera...	0.02	OrthoFinder output from all 47 species
Spa_g14594	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g39269	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g51753	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g41128	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e006249_P001	Zm00001e006249	Probable polygalacturonase OS=Vitis vinifera...	0.06	OrthoFinder output from all 47 species
Zm00001e023760_P001	Zm00001e023760	Probable polygalacturonase OS=Vitis vinifera...	0.04	OrthoFinder output from all 47 species
Zm00001e027889_P004	Zm00001e027889	Probable polygalacturonase OS=Vitis vinifera...	0.02	OrthoFinder output from all 47 species
Zm00001e029809_P002	Zm00001e029809	Probable polygalacturonase OS=Vitis vinifera...	0.02	OrthoFinder output from all 47 species
Zm00001e039674_P002	Zm00001e039674	Probable polygalacturonase OS=Vitis vinifera...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	HCCA
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0000272	polysaccharide catabolic process	IEP	HCCA
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	HCCA
MF	GO:0005096	GTPase activator activity	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	HCCA
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008047	enzyme activator activity	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
MF	GO:0016160	amylase activity	IEP	HCCA
MF	GO:0016161	beta-amylase activity	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
MF	GO:0033926	glycopeptide alpha-N-acetylgalactosaminidase activity	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043647	inositol phosphate metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
BP	GO:0046164	alcohol catabolic process	IEP	HCCA
BP	GO:0046174	polyol catabolic process	IEP	HCCA
BP	GO:0046434	organophosphate catabolic process	IEP	HCCA
BP	GO:0046838	phosphorylated carbohydrate dephosphorylation	IEP	HCCA
BP	GO:0046855	inositol phosphate dephosphorylation	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
BP	GO:0071545	inositol phosphate catabolic process	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	76	417

External Links

No external refs found!

Solyc06g009790.4.1 (Solyc06g009790)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation