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  5. Solyc06g009610.1.1

Solyc06g009610.1.1 (Solyc06g009610)


Aliases : Solyc06g009610

Description : transcription factor (GRAS). MIG1 GRAS-type transcription factor


Gene families : OG0011629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0011629_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g009610.1.1
Cluster HCCA: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00167420 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.GRAS... 0.03 OrthoFinder output from all 47 species
AMTR_s00166p00046540 LAS, SCL18,... External stimuli response.biotic... 0.04 OrthoFinder output from all 47 species
AMTR_s00166p00048460 RGL2,... External stimuli response.biotic... 0.04 OrthoFinder output from all 47 species
AMTR_s00166p00052330 RGL2,... External stimuli response.biotic... 0.02 OrthoFinder output from all 47 species
GSVIVT01028126001 No alias External stimuli response.biotic... 0.05 OrthoFinder output from all 47 species
Solyc01g059960.1.1 RGL2, Solyc01g059960 transcription factor (GRAS). MIG1 GRAS-type transcription factor 0.09 OrthoFinder output from all 47 species
Solyc01g079380.1.1 RGL1, RGL, Solyc01g079380 transcription factor (GRAS). MIG1 GRAS-type transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 494 862
No external refs found!