1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc06g009530.3.1

Solyc06g009530.3.1 (Solyc06g009530)


Aliases : Solyc06g009530

Description : no hits & (original description: none)


Gene families : OG0007484 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007484_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g009530.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00052150 evm_27.TU.AmTr_v1...
No description available
 0.06 OrthoFinder output from all 47 species
AT3G62360 No alias Carbohydrate-binding-like fold 0.14 OrthoFinder output from all 47 species
Adi_g086384 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g14070 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020965.5 No alias No description available 0.01 OrthoFinder output from all 47 species
Ehy_g02941 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_02734 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os01g19470.1 LOC_Os01g19470 no hits & (original description: none) 0.15 OrthoFinder output from all 47 species
Mp1g25520.1 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Msp_g14209 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g15173 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13628 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo173602 No alias No description available 0.03 OrthoFinder output from all 47 species
Zm00001e026218_P001 Zm00001e026218 no hits & (original description: none) 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0005047 signal recognition particle binding IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!