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  5. Solyc06g009390.3.1

Solyc06g009390.3.1 (Solyc06g009390)


Aliases : Solyc06g009390

Description : transcription factor (DBP)


Gene families : OG0000632 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000632_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g009390.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00195190 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.DBP... 0.02 OrthoFinder output from all 47 species
AT2G33700 No alias Protein phosphatase 2C family protein 0.03 OrthoFinder output from all 47 species
AT3G62260 No alias Protein phosphatase 2C family protein 0.03 OrthoFinder output from all 47 species
Adi_g057511 No alias clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g066815 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26151 No alias clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g51622 No alias clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22591 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g01725 No alias clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene03511.t1 Aspi01Gene03511 clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05677.t1 AtDBP1, DBP1,... clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s3252.g115111 No alias clade G phosphatase *(DBP) & original description: CDS=374-1630 0.02 OrthoFinder output from all 47 species
Ceric.09G079600.1 AtDBP1, DBP1,... clade G phosphatase *(DBP) & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g37727 No alias clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g19762 No alias clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g09598 No alias clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21633 No alias clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04681 No alias clade G phosphatase *(DBP) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01017639001 No alias RNA biosynthesis.transcriptional activation.DBP... 0.03 OrthoFinder output from all 47 species
GSVIVT01028192001 No alias RNA biosynthesis.transcriptional activation.DBP... 0.04 OrthoFinder output from all 47 species
Gb_16142 No alias transcription factor (DBP). clade G phosphatase 0.04 OrthoFinder output from all 47 species
LOC_Os01g19130.1 LOC_Os01g19130 transcription factor (DBP) 0.05 OrthoFinder output from all 47 species
LOC_Os05g04360.1 LOC_Os05g04360 transcription factor (DBP) 0.03 OrthoFinder output from all 47 species
Len_g04640 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g08148 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g55507 No alias clade G phosphatase *(DBP) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g03868 No alias clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10426899g0020 AtDBP1, DBP1 transcription factor (DBP) 0.01 OrthoFinder output from all 47 species
MA_13571g0010 No alias transcription factor (DBP). clade G phosphatase 0.03 OrthoFinder output from all 47 species
MA_185497g0010 No alias transcription factor (DBP). clade G phosphatase 0.04 OrthoFinder output from all 47 species
Mp6g03430.1 AtDBP1, DBP1 transcription factor (DBP) 0.02 OrthoFinder output from all 47 species
Solyc01g068000.4.1 Solyc01g068000 transcription factor (DBP) 0.04 OrthoFinder output from all 47 species
Solyc07g007220.3.1 AtDBP1, DBP1,... transcription factor (DBP) 0.04 OrthoFinder output from all 47 species
Spa_g22865 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g24550 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g46551 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54548 No alias clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g57303 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g27710 No alias clade G phosphatase *(DBP) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e025432_P001 Zm00001e025432 transcription factor (DBP) 0.03 OrthoFinder output from all 47 species
Zm00001e040337_P001 Zm00001e040337 transcription factor (DBP) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008519 ammonium transmembrane transporter activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0040008 regulation of growth IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0045927 positive regulation of growth IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR001932 PPM-type_phosphatase-like_dom 53 305
No external refs found!