Solyc06g008970.4.1 (UVH6, ATXPD, Solyc06g008970)

Aliases : UVH6, ATXPD, Solyc06g008970

Description : subunit XPD of multifunctional TFIIh complex. component XPD of TFIIh basal transcription factor complex

Gene families : OG0004711 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004711_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g008970.4.1

Target	Alias	Description	ECC score	Gene Family Method
Aev_g29567	UVH6, ATXPD	component *(XPD) of TFIIh basal transcription factor...	0.03	OrthoFinder output from all 47 species
Als_g13498	UVH6, ATXPD	component *(XPD) of TFIIh basal transcription factor...	0.03	OrthoFinder output from all 47 species
Ceric.34G044700.1	UVH6, ATXPD,...	component *(XPD) of TFIIh basal transcription factor...	0.05	OrthoFinder output from all 47 species
Dcu_g07727	UVH6, ATXPD	component *(XPD) of TFIIh basal transcription factor...	0.05	OrthoFinder output from all 47 species
GSVIVT01011125001	UVH6, ATXPD	RNA biosynthesis.RNA polymerase II-dependent...	0.03	OrthoFinder output from all 47 species
LOC_Os05g05260.1	UVH6, ATXPD,...	subunit XPD of multifunctional TFIIh complex. component...	0.03	OrthoFinder output from all 47 species
Lfl_g39949	UVH6, ATXPD	component *(XPD) of TFIIh basal transcription factor...	0.03	OrthoFinder output from all 47 species
Zm00001e040409_P001	UVH6, ATXPD,...	subunit XPD of multifunctional TFIIh complex. component...	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003678	DNA helicase activity	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003909	DNA ligase activity	IEP	HCCA
MF	GO:0003910	DNA ligase (ATP) activity	IEP	HCCA
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
MF	GO:0005049	nuclear export signal receptor activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	HCCA
MF	GO:0017056	structural constituent of nuclear pore	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0031625	ubiquitin protein ligase binding	IEP	HCCA
MF	GO:0043015	gamma-tubulin binding	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010614	DEAD_2	72	258
IPR006555	ATP-dep_Helicase_C	524	697
IPR010643	HBB	272	412

External Links

No external refs found!

Solyc06g008970.4.1 (UVH6, ATXPD, Solyc06g008970)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation