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  5. Solyc06g005860.3.1

Solyc06g005860.3.1 (Solyc06g005860)


Aliases : Solyc06g005860

Description : component MTR3/RRP41L of exosome EXO9 core complex


Gene families : OG0006439 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006439_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g005860.3.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
Adi_g077012 No alias component *(MTR3/RRP41L) of exosome EXO9 core complex &... 0.02 OrthoFinder output from all 47 species
Aop_g04989 No alias component *(MTR3/RRP41L) of exosome EXO9 core complex &... 0.03 OrthoFinder output from all 47 species
Azfi_s0132.g049232 No alias component *(MTR3/RRP41L) of exosome EXO9 core complex &... 0.03 OrthoFinder output from all 47 species
Gb_13188 No alias component MTR3/RRP41L of exosome EXO9 core complex 0.03 OrthoFinder output from all 47 species
MA_210497g0010 No alias Exosome complex component RRP41-like OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g23177 No alias component *(MTR3/RRP41L) of exosome EXO9 core complex &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0106413 dihydrouridine synthase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR015847 ExoRNase_PH_dom2 169 230
IPR001247 ExoRNase_PH_dom1 41 165
No external refs found!