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  5. Solyc06g005710.3.1

Solyc06g005710.3.1 (PTAC16, Solyc06g005710)


Aliases : PTAC16, Solyc06g005710

Description : TAC16 cofactor of plastid-encoded RNA polymerase


Gene families : OG0007234 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007234_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g005710.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00257120 PTAC16,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.17 OrthoFinder output from all 47 species
AT3G46780 PTAC16 plastid transcriptionally active 16 0.3 OrthoFinder output from all 47 species
Adi_g011791 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.09 OrthoFinder output from all 47 species
Aev_g02347 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.05 OrthoFinder output from all 47 species
Ala_g09140 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.12 OrthoFinder output from all 47 species
Als_g03152 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.13 OrthoFinder output from all 47 species
Aob_g18050 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.07 OrthoFinder output from all 47 species
Aop_g68943 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.13 OrthoFinder output from all 47 species
Aspi01Gene18545.t1 PTAC16, Aspi01Gene18545 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.06 OrthoFinder output from all 47 species
Azfi_s0072.g036982 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.06 OrthoFinder output from all 47 species
Cba_g03987 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.09 OrthoFinder output from all 47 species
Ceric.19G051100.1 PTAC16, Ceric.19G051100 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.2 OrthoFinder output from all 47 species
Cre02.g081250 No alias No description available 0.08 OrthoFinder output from all 47 species
Dac_g08836 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.08 OrthoFinder output from all 47 species
Dcu_g01601 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.11 OrthoFinder output from all 47 species
Dde_g25352 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.15 OrthoFinder output from all 47 species
Ehy_g03814 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.08 OrthoFinder output from all 47 species
GSVIVT01024905001 PTAC16 RNA biosynthesis.organelle machineries.RNA polymerase... 0.18 OrthoFinder output from all 47 species
Gb_02666 PTAC16 TAC16 cofactor of plastid-encoded RNA polymerase 0.15 OrthoFinder output from all 47 species
LOC_Os05g22614.1 PTAC16, LOC_Os05g22614 TAC16 cofactor of plastid-encoded RNA polymerase 0.05 OrthoFinder output from all 47 species
Len_g15964 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.14 OrthoFinder output from all 47 species
Lfl_g39154 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.11 OrthoFinder output from all 47 species
MA_806g0020 PTAC16 TAC16 cofactor of plastid-encoded RNA polymerase 0.07 OrthoFinder output from all 47 species
Mp8g16460.1 PTAC16 TAC16 cofactor of plastid-encoded RNA polymerase 0.2 OrthoFinder output from all 47 species
Msp_g05519 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.03 OrthoFinder output from all 47 species
Nbi_g10293 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.07 OrthoFinder output from all 47 species
Ore_g05533 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.08 OrthoFinder output from all 47 species
Ore_g05534 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.04 OrthoFinder output from all 47 species
Pir_g07718 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.16 OrthoFinder output from all 47 species
Pnu_g17360 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g014956 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.06 OrthoFinder output from all 47 species
Spa_g56471 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.04 OrthoFinder output from all 47 species
Tin_g08369 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.1 OrthoFinder output from all 47 species
Zm00001e026770_P002 PTAC16, Zm00001e026770 TAC16 cofactor of plastid-encoded RNA polymerase 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009512 cytochrome b6f complex IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR016040 NAD(P)-bd_dom 89 297
No external refs found!