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  5. Solyc05g056140.4.1

Solyc05g056140.4.1 (Solyc05g056140)


Aliases : Solyc05g056140

Description : E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana (sp|q9lta6|wav3_arath : 218.0)


Gene families : OG0000599 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000599_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g056140.4.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00148p00068590 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G08050 No alias Zinc finger (C3HC4-type RING finger) family protein 0.03 OrthoFinder output from all 47 species
AT3G54780 No alias Zinc finger (C3HC4-type RING finger) family protein 0.02 OrthoFinder output from all 47 species
AT4G37890 EDA40 Zinc finger (C3HC4-type RING finger) family protein 0.03 OrthoFinder output from all 47 species
AT5G49665 No alias Zinc finger (C3HC4-type RING finger) family protein 0.03 OrthoFinder output from all 47 species
Aob_g04456 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25613.t1 Aspi01Gene25613 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G060200.1 Ceric.09G060200 not classified & original description: pacid=50588484... 0.02 OrthoFinder output from all 47 species
Ceric.24G014600.1 Ceric.24G014600 not classified & original description: pacid=50629291... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000605.6 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Dcu_g04921 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10790 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25091 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009240001 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01016259001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
Gb_01603 No alias ubiquitin protein ligase (WAV3) 0.03 OrthoFinder output from all 47 species
Gb_24701 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os04g01160.1 LOC_Os04g01160 ubiquitin protein ligase (WAV3) 0.02 OrthoFinder output from all 47 species
LOC_Os10g32760.1 LOC_Os10g32760 Probable E3 ubiquitin-protein ligase WAVH2... 0.02 OrthoFinder output from all 47 species
Len_g21346 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g24093 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g15586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08356 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30869 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g15784 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007353 No alias not classified & original description: CDS=1-2007 0.05 OrthoFinder output from all 47 species
Spa_g38756 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e012729_P001 Zm00001e012729 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e016170_P004 Zm00001e016170 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e023647_P001 Zm00001e023647 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e040461_P002 Zm00001e040461 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e041206_P001 Zm00001e041206 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 81 110
IPR002035 VWF_A 278 462
IPR032838 Vwaint_dom 629 701
No external refs found!