1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc05g055870.3.1

Solyc05g055870.3.1 (MEE66, Solyc05g055870)


Aliases : MEE66, Solyc05g055870

Description : F-box protein At2g02240 OS=Arabidopsis thaliana (sp|q3e6p4|fb95_arath : 234.0)


Gene families : OG0000279 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000279_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g055870.3.1
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AT1G09155 PP2-B15, AtPP2-B15 phloem protein 2-B15 0.03 OrthoFinder output from all 47 species
AT1G56240 PP2-B13, AtPP2-B13 phloem protein 2-B13 0.03 OrthoFinder output from all 47 species
AT1G56250 PP2-B14, AtPP2-B14 phloem protein 2-B14 0.05 OrthoFinder output from all 47 species
Als_g15955 AtPP2-B8, PP2-B8 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55186.t1 AtPP2-B8,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene55189.t2 ATPP2-A4,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g14188 AtPP2-B7, PP2-B7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21011 ATPP2-B11, PP2-B11 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g18479 MEE66 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019353001 ATPP2-A4, PP2-A4 Protein PHLOEM PROTEIN 2-LIKE A1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01019854001 PP2-A11, AtPP2-A11 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
LOC_Os02g56820.1 MEE66, LOC_Os02g56820 F-box protein At2g02240 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10434357g0020 PP2-B15, AtPP2-B15 F-box protein PP2-B15 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_134768g0010 AtPP2-B6, PP2-B6 F-box protein PP2-B11 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Msp_g11862 PP2-A11, AtPP2-A11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g34528 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g100010.3.1 PP2-B15,... F-box protein PP2-B15 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc10g017960.2.1 AtPP2-A13,... component FBX of SCF E3 ubiquitin ligase complex 0.03 OrthoFinder output from all 47 species
Zm00001e041427_P001 AtPP2-A13,... component FBX of SCF E3 ubiquitin ligase complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR025886 PP2-like 112 305
No external refs found!