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  5. Solyc05g053800.3.1

Solyc05g053800.3.1 (RAD50, ATRAD50, Solyc05g053800)


Aliases : RAD50, ATRAD50, Solyc05g053800

Description : component RAD50 of MRE11-RAD50-NBS1 (MRN) complex. component RAD50 of DNA resection MRE11-RAD50-NBS1 (MRN) complex


Gene families : OG0005654 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005654_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g053800.3.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00258230 RAD50, ATRAD50,... DNA damage response.DNA repair mechanisms.homologous... 0.07 OrthoFinder output from all 47 species
AT2G31970 RAD50, ATRAD50 DNA repair-recombination protein (RAD50) 0.06 OrthoFinder output from all 47 species
Adi_g023143 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.02 OrthoFinder output from all 47 species
Aob_g12355 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.02 OrthoFinder output from all 47 species
Aop_g01400 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.04 OrthoFinder output from all 47 species
Ceric.14G029200.1 RAD50, ATRAD50,... component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.04 OrthoFinder output from all 47 species
Cre03.g192550 RAD50, ATRAD50 DNA damage response.DNA repair mechanisms.homologous... 0.03 OrthoFinder output from all 47 species
Dcu_g08986 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.03 OrthoFinder output from all 47 species
Gb_12673 RAD50, ATRAD50 component RAD50 of MRE11-RAD50-NBS1 (MRN) complex.... 0.04 OrthoFinder output from all 47 species
Lfl_g03493 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.07 OrthoFinder output from all 47 species
Mp5g04390.1 RAD50, ATRAD50 component RAD50 of MRE11-RAD50-NBS1 (MRN) complex.... 0.04 OrthoFinder output from all 47 species
Nbi_g01485 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.03 OrthoFinder output from all 47 species
Ppi_g05944 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.06 OrthoFinder output from all 47 species
Sam_g37184 No alias component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.05 OrthoFinder output from all 47 species
Smo405818 RAD50, ATRAD50 DNA damage response.DNA repair mechanisms.homologous... 0.04 OrthoFinder output from all 47 species
Spa_g00478 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.02 OrthoFinder output from all 47 species
Zm00001e022614_P001 RAD50, ATRAD50,... component RAD50 of MRE11-RAD50-NBS1 (MRN) complex.... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
MF GO:0031491 nucleosome binding IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
InterPro domains Description Start Stop
IPR038729 Rad50/SbcC_AAA 7 250
IPR013134 Zn_hook_RAD50 687 725
No external refs found!