Solyc05g052510.4.1 (Solyc05g052510)

Aliases : Solyc05g052510

Description : heavy chain of clathrin triskelion

Gene families : OG0002108 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002108_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc05g052510.4.1
Cluster	HCCA: Cluster_33

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00168430	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.09	OrthoFinder output from all 47 species
AT3G08530	No alias	Clathrin, heavy chain	0.02	OrthoFinder output from all 47 species
AT3G11130	No alias	Clathrin, heavy chain	0.15	OrthoFinder output from all 47 species
Adi_g011980	No alias	heavy chain of clathrin triskelion & original description: none	0.05	OrthoFinder output from all 47 species
Adi_g086303	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g20290	No alias	heavy chain of clathrin triskelion & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g12409	No alias	heavy chain of clathrin triskelion & original description: none	0.07	OrthoFinder output from all 47 species
Als_g14456	No alias	heavy chain of clathrin triskelion & original description: none	0.06	OrthoFinder output from all 47 species
Als_g61224	No alias	heavy chain of clathrin triskelion & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g02408	No alias	heavy chain of clathrin triskelion & original description: none	0.08	OrthoFinder output from all 47 species
Aop_g08144	No alias	heavy chain of clathrin triskelion & original description: none	0.05	OrthoFinder output from all 47 species
Azfi_s0021.g015746	No alias	heavy chain of clathrin triskelion & original...	0.12	OrthoFinder output from all 47 species
Azfi_s0078.g038251	No alias	heavy chain of clathrin triskelion & original...	0.15	OrthoFinder output from all 47 species
Cba_g27949	No alias	heavy chain of clathrin triskelion & original description: none	0.07	OrthoFinder output from all 47 species
Cba_g27950	No alias	heavy chain of clathrin triskelion & original description: none	0.06	OrthoFinder output from all 47 species
Cba_g27951	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.06G067200.1	Ceric.06G067200	heavy chain of clathrin triskelion & original...	0.1	OrthoFinder output from all 47 species
Ceric.1Z011000.1	Ceric.1Z011000	heavy chain of clathrin triskelion & original...	0.1	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000042.11	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.07	OrthoFinder output from all 47 species
Cre02.g101400	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.03	OrthoFinder output from all 47 species
Dcu_g02059	No alias	heavy chain of clathrin triskelion & original description: none	0.16	OrthoFinder output from all 47 species
Dde_g10505	No alias	heavy chain of clathrin triskelion & original description: none	0.06	OrthoFinder output from all 47 species
GSVIVT01024708001	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.03	OrthoFinder output from all 47 species
GSVIVT01032792001	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.22	OrthoFinder output from all 47 species
Gb_33028	No alias	heavy chain of clathrin triskelion	0.12	OrthoFinder output from all 47 species
Gb_33029	No alias	Clathrin heavy chain 2 OS=Arabidopsis thaliana...	0.1	OrthoFinder output from all 47 species
LOC_Os11g01380.1	LOC_Os11g01380	heavy chain of clathrin triskelion	0.2	OrthoFinder output from all 47 species
LOC_Os12g01390.1	LOC_Os12g01390	heavy chain of clathrin triskelion	0.14	OrthoFinder output from all 47 species
Len_g11569	No alias	heavy chain of clathrin triskelion & original description: none	0.11	OrthoFinder output from all 47 species
Lfl_g03514	No alias	heavy chain of clathrin triskelion & original description: none	0.12	OrthoFinder output from all 47 species
MA_47260g0010	No alias	Clathrin heavy chain 2 OS=Oryza sativa subsp. japonica...	0.05	OrthoFinder output from all 47 species
MA_528g0010	No alias	Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica...	0.07	OrthoFinder output from all 47 species
MA_5992036g0010	No alias	Clathrin heavy chain 1 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
MA_641648g0010	No alias	Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica...	0.05	OrthoFinder output from all 47 species
MA_8471497g0010	No alias	Clathrin heavy chain 2 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Mp6g19660.1	No alias	heavy chain of clathrin triskelion	0.11	OrthoFinder output from all 47 species
Nbi_g03873	No alias	heavy chain of clathrin triskelion & original description: none	0.08	OrthoFinder output from all 47 species
Ore_g16662	No alias	heavy chain of clathrin triskelion & original description: none	0.07	OrthoFinder output from all 47 species
Pir_g13635	No alias	heavy chain of clathrin triskelion & original description: none	0.07	OrthoFinder output from all 47 species
Pp3c2_3220V3.1	Pp3c2_3220	Clathrin, heavy chain	0.02	OrthoFinder output from all 47 species
Ppi_g29284	No alias	heavy chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g11622	No alias	heavy chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Smo149750	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.11	OrthoFinder output from all 47 species
Spa_g48226	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g08699	No alias	heavy chain of clathrin triskelion & original description: none	0.08	OrthoFinder output from all 47 species
Zm00001e009296_P003	Zm00001e009296	heavy chain of clathrin triskelion	0.24	OrthoFinder output from all 47 species
Zm00001e020822_P001	Zm00001e020822	heavy chain of clathrin triskelion	0.26	OrthoFinder output from all 47 species
Zm00001e023940_P002	Zm00001e023940	heavy chain of clathrin triskelion	0.18	OrthoFinder output from all 47 species
Zm00001e039167_P001	Zm00001e039167	heavy chain of clathrin triskelion	0.22	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030118	clathrin coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030125	clathrin vesicle coat	None	Extended
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEA	Interproscan
CC	GO:0030132	clathrin coat of coated pit	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098797	plasma membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
BP	GO:0022406	membrane docking	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	HCCA
CC	GO:0030126	COPI vesicle coat	IEP	HCCA
CC	GO:0030131	clathrin adaptor complex	IEP	HCCA
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	HCCA
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	HCCA
BP	GO:0048278	vesicle docking	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	HCCA
BP	GO:0051640	organelle localization	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
BP	GO:0140029	exocytic process	IEP	HCCA
BP	GO:0140056	organelle localization by membrane tethering	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022365	Clathrin_H-chain_propeller_rpt	154	197
IPR022365	Clathrin_H-chain_propeller_rpt	22	56
IPR015348	Clathrin_H-chain_linker_core	344	367
IPR000547	Clathrin_H-chain/VPS_repeat	1289	1431
IPR000547	Clathrin_H-chain/VPS_repeat	1440	1579
IPR000547	Clathrin_H-chain/VPS_repeat	993	1132
IPR000547	Clathrin_H-chain/VPS_repeat	701	840
IPR000547	Clathrin_H-chain/VPS_repeat	850	974
IPR000547	Clathrin_H-chain/VPS_repeat	1147	1281
IPR000547	Clathrin_H-chain/VPS_repeat	557	688

External Links

No external refs found!

Solyc05g052510.4.1 (Solyc05g052510)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation