Solyc05g052220.3.1 (Solyc05g052220)

Aliases : Solyc05g052220

Description : U-box domain-containing protein 62 OS=Arabidopsis thaliana (sp|q6dbn5|pub62_arath : 267.0)

Gene families : OG0000864 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000864_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc05g052220.3.1
Cluster	HCCA: Cluster_105

Target	Alias	Description	ECC score	Gene Family Method
Adi_g020571	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g047333	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g112812	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g112813	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g10724	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.34G024200.1	Ceric.34G024200	E3 ubiquitin ligase & original description:...	0.03	OrthoFinder output from all 47 species
Dcu_g47007	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01032672001	No alias	U-box domain-containing protein 62 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Gb_06756	No alias	U-box domain-containing protein 62 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Lfl_g19872	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g30807	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
MA_109588g0010	No alias	U-box domain-containing protein 62 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Ore_g12773	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g09636	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g17020	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0032784	regulation of DNA-templated transcription elongation	IEP	HCCA
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	IEP	HCCA
BP	GO:0032968	positive regulation of transcription elongation by RNA polymerase II	IEP	HCCA
BP	GO:0034243	regulation of transcription elongation by RNA polymerase II	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	HCCA
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	242	306

External Links

No external refs found!

Solyc05g052220.3.1 (Solyc05g052220)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation