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  5. Solyc05g049950.3.1

Solyc05g049950.3.1 (smB, Solyc05g049950)


Aliases : smB, Solyc05g049950

Description : component Sm-B of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex


Gene families : OG0007641 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007641_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g049950.3.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00109230 smB,... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.06 OrthoFinder output from all 47 species
AT4G20440 smB small nuclear ribonucleoprotein associated protein B 0.11 OrthoFinder output from all 47 species
Ceric.03G034300.1 smB, Ceric.03G034300 component *(Sm-B) of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species
Cre14.g611150 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Dcu_g49337 smB component *(Sm-B) of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species
GSVIVT01034611001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.05 OrthoFinder output from all 47 species
LOC_Os07g07220.1 smB, LOC_Os07g07220 component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.1 OrthoFinder output from all 47 species
MA_10426235g0010 smB component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species
MA_10435493g0010 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.05 OrthoFinder output from all 47 species
Ppi_g51507 No alias auxiliary component *(NAA38) of NatC N-terminal... 0.02 OrthoFinder output from all 47 species
Smo8958 smB RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Zm00001e011476_P001 Zm00001e011476 component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.06 OrthoFinder output from all 47 species
Zm00001e032884_P001 Zm00001e032884 component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 9 81
No external refs found!