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  5. Solyc05g047690.3.1

Solyc05g047690.3.1 (ATSAP18, SAP18, Solyc05g047690)


Aliases : ATSAP18, SAP18, Solyc05g047690

Description : associated component SAP18 of histone deacetylase machineries


Gene families : OG0004148 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g047690.3.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00193310 ATSAP18, SAP18,... Chromatin organisation.histone modifications.histone... 0.07 OrthoFinder output from all 47 species
AT2G45640 ATSAP18, SAP18 SIN3 associated polypeptide P18 0.03 OrthoFinder output from all 47 species
GSVIVT01027575001 ATSAP18, SAP18 Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder output from all 47 species
MA_83939g0010 ATSAP18, SAP18 associated component SAP18 of histone deacetylase machineries 0.1 OrthoFinder output from all 47 species
Nbi_g02563 ATSAP18, SAP18 associated component *(SAP18) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Tin_g30788 ATSAP18, SAP18 associated component *(SAP18) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Zm00001e013500_P001 ATSAP18, SAP18,... associated component SAP18 of histone deacetylase machineries 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR010516 SAP18 33 153
No external refs found!