1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc05g018310.1.1

Solyc05g018310.1.1 (Solyc05g018310)


Aliases : Solyc05g018310

Description : RING-H2-class E3 ligase


Gene families : OG0002999 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002999_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g018310.1.1
Cluster HCCA: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
AT2G20030 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G28890 No alias RING/U-box superfamily protein 0.08 OrthoFinder output from all 47 species
AT5G05810 ATL43 RING/U-box superfamily protein 0.05 OrthoFinder output from all 47 species
Aspi01Gene00440.t1 ATL43, Aspi01Gene00440 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene04019.t1 ATL43, Aspi01Gene04019 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene18266.t1 Aspi01Gene18266 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Azfi_s0072.g037044 ATL43 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Ceric.02G098900.1 Ceric.02G098900 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.16G035000.1 ATL43, Ceric.16G035000 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
MA_179334g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_35091g0010 No alias RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
MA_426345g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Pir_g36297 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g49281 ATL43 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pnu_g30629 ATL43 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ppi_g30667 ATL43 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Solyc07g007440.1.1 ATL43, Solyc07g007440 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc12g007320.1.1 Solyc12g007320 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Zm00001e013130_P001 ATL43, Zm00001e013130 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e026695_P001 Zm00001e026695 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e032612_P001 Zm00001e032612 RING-H2-class E3 ligase 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 105 148
No external refs found!