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  5. Solyc05g012100.3.1

Solyc05g012100.3.1 (FLN2, Solyc05g012100)


Aliases : FLN2, Solyc05g012100

Description : component FLN2 of plastid-encoded RNA polymerase


Gene families : OG0000931 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000931_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g012100.3.1
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00123310 evm_27.TU.AmTr_v1... Carbohydrate metabolism.sucrose... 0.02 OrthoFinder output from all 47 species
AMTR_s00047p00218860 FLN2,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.1 OrthoFinder output from all 47 species
AT1G69200 FLN2 fructokinase-like 2 0.18 OrthoFinder output from all 47 species
Als_g03668 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
GSVIVT01012237001 FLN2 RNA biosynthesis.organelle machineries.RNA polymerase... 0.18 OrthoFinder output from all 47 species
LOC_Os03g40550.1 FLN2, LOC_Os03g40550 component FLN2 of plastid-encoded RNA polymerase 0.06 OrthoFinder output from all 47 species
Zm00001e004979_P002 FLN2, Zm00001e004979 component FLN2 of plastid-encoded RNA polymerase 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006353 DNA-templated transcription termination IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR011611 PfkB_dom 307 577
No external refs found!