Solyc05g008050.3.1 (ATHB17, HB17,...)

Aliases : ATHB17, HB17, ATHB-17, Solyc05g008050

Description : transcription factor (HD-ZIP I/II)

Gene families : OG0000538 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000538_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc05g008050.3.1
Cluster	HCCA: Cluster_17

Target	Alias	Description	ECC score	Gene Family Method
AT5G47370	HAT2	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein	0.07	OrthoFinder output from all 47 species
Adi_g021164	HAT14	HD-ZIP I/II-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Adi_g082135	HAT22	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ala_g03647	HAT14	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.04G036500.1	HAT14, Ceric.04G036500	HD-ZIP I/II-type transcription factor & original...	0.06	OrthoFinder output from all 47 species
Ceric.15G062900.1	HAT14, Ceric.15G062900	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dac_g10914	HAT3	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dde_g50611	HAT22	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01009274001	HAT22	RNA biosynthesis.transcriptional activation.HB...	0.05	OrthoFinder output from all 47 species
Gb_12394	HB-2, ATHB2, ATHB-2, HAT4	Homeobox-leucine zipper protein HOX11 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
LOC_Os02g05640.1	HB-2, ATHB2,...	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
LOC_Os06g04870.1	HB4, ATHB-4,...	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
MA_12174g0010	HAT22	transcription factor (HD-ZIP I/II)	0.06	OrthoFinder output from all 47 species
MA_21460g0010	HAT14	transcription factor (HD-ZIP I/II)	0.02	OrthoFinder output from all 47 species
MA_57689g0010	HAT14	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
Ore_g32644	HAT14	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ore_g35413	HAT22	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Pir_g46450	HAT22	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Pnu_g11047	HAT14	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008373	HAT14	not classified & original description: CDS=1-423	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017947	HAT14	not classified & original description: CDS=450-2336	0.03	OrthoFinder output from all 47 species
Solyc04g077220.3.1	HAT22, Solyc04g077220	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
Zm00001e038644_P001	HAT22, Zm00001e038644	transcription factor (HD-ZIP I/II)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	83	137
IPR003106	Leu_zip_homeo	139	173

External Links

No external refs found!

Solyc05g008050.3.1 (ATHB17, HB17,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation