Solyc05g007070.2.1 (AMY3, ATAMY3, Solyc05g007070)

Aliases : AMY3, ATAMY3, Solyc05g007070

Description : alpha amylase

Gene families : OG0000515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000515_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc05g007070.2.1
Cluster	HCCA: Cluster_68

Target	Alias	Description	ECC score	Gene Family Method
Als_g38642	AMY2, ATAMY2	alpha amylase & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g16013	AMY3, ATAMY3	alpha amylase & original description: none	0.03	OrthoFinder output from all 47 species
Cre08.g384750	AMY2, ATAMY2	Carbohydrate metabolism.starch...	0.02	OrthoFinder output from all 47 species
Cre08.g385500	AMY2, ATAMY2	Carbohydrate metabolism.starch...	0.04	OrthoFinder output from all 47 species
Dde_g11602	AMY3, ATAMY3	alpha amylase & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g18006	AMY1, ATAMY1	alpha amylase & original description: none	0.02	OrthoFinder output from all 47 species
Gb_04800	AMY2, ATAMY2	alpha amylase	0.02	OrthoFinder output from all 47 species
Gb_04803	AMY2, ATAMY2	alpha amylase	0.02	OrthoFinder output from all 47 species
Gb_18574	AMY3, ATAMY3	alpha amylase	0.02	OrthoFinder output from all 47 species
LOC_Os02g52710.1	AMY1, ATAMY1,...	alpha amylase	0.03	OrthoFinder output from all 47 species
Lfl_g24732	AMY1, ATAMY1	alpha amylase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g12491	AMY3, ATAMY3	alpha amylase & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	IEA	Interproscan
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004556	alpha-amylase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016160	amylase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003857	3-hydroxyacyl-CoA dehydrogenase activity	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012850	A-amylase_bs_C	832	890
IPR006047	Glyco_hydro_13_cat_dom	528	781

External Links

No external refs found!