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  5. Solyc05g006930.3.1

Solyc05g006930.3.1 (Solyc05g006930)


Aliases : Solyc05g006930

Description : starch granule initiation factor (PTST2)


Gene families : OG0007087 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007087_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g006930.3.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
Adi_g021741 No alias starch granule initiation factor *(PTST2) & original... 0.02 OrthoFinder output from all 47 species
Aev_g06731 No alias starch granule initiation factor *(PTST2) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene41190.t1 Aspi01Gene41190 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g40922 No alias starch granule initiation factor *(PTST2) & original... 0.04 OrthoFinder output from all 47 species
Solyc01g010470.2.1 Solyc01g010470 starch granule initiation factor (PTST2) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR032640 AMPK1_CBM 445 521
No external refs found!