Solyc05g005880.2.1 (Solyc05g005880)

Aliases : Solyc05g005880

Description : component mtRPS13|psRPS13 of small ribosomal subunit proteome. component psRPS13|mtRPS13 of small ribosomal subunit proteome

Gene families : OG0004147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004147_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc05g005880.2.1
Cluster	HCCA: Cluster_75

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00008p00089340	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
AT5G14320	No alias	Ribosomal protein S13/S18 family	0.11	OrthoFinder output from all 47 species
Adi_g042167	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aev_g04341	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ala_g00666	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Als_g09424	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aob_g00300	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aop_g40481	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aspi01Gene65448.t1	Aspi01Gene65448	component *(uS13c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Azfi_s0065.g035921	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Ceric.05G059300.1	Ceric.05G059300	component *(uS13c) of small plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Cre12.g493950	No alias	Protein biosynthesis.organelle translation...	0.12	OrthoFinder output from all 47 species
Dac_g26723	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Dcu_g44492	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Ehy_g00682	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01008933001	No alias	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Gb_24491	No alias	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.04	OrthoFinder output from all 47 species
LOC_Os03g49710.1	LOC_Os03g49710	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.13	OrthoFinder output from all 47 species
Len_g05067	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Len_g07705	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Lfl_g00631	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
MA_10431241g0010	No alias	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.04	OrthoFinder output from all 47 species
Mp1g18230.1	No alias	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.1	OrthoFinder output from all 47 species
Msp_g02627	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Nbi_g15772	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ore_g09656	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Pir_g35705	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014746	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Spa_g00577	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Tin_g04300	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Zm00001e005396_P004	Zm00001e005396	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.13	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008312	7S RNA binding	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
CC	GO:0048500	signal recognition particle	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001892	Ribosomal_S13	48	152

External Links

No external refs found!

Solyc05g005880.2.1 (Solyc05g005880)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation