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  5. Solyc04g082090.3.1

Solyc04g082090.3.1 (AMY2, ATAMY2, Solyc04g082090)


Aliases : AMY2, ATAMY2, Solyc04g082090

Description : alpha amylase


Gene families : OG0000515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000515_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g082090.3.1

Target Alias Description ECC score Gene Family Method Actions
Dcu_g12959 AMY1, ATAMY1 alpha amylase & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g43320 AMY2, ATAMY2 not classified & original description: none 0.09 OrthoFinder output from all 47 species
Mp1g24800.1 AMY1, ATAMY1 alpha amylase 0.01 OrthoFinder output from all 47 species
Mp2g22120.1 AMY2, ATAMY2 alpha amylase 0.03 OrthoFinder output from all 47 species
Smo97625 AMY1, ATAMY1 Carbohydrate metabolism.starch... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0004556 alpha-amylase activity IEA Interproscan
MF GO:0005509 calcium ion binding IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR012850 A-amylase_bs_C 351 406
IPR006047 Glyco_hydro_13_cat_dom 42 298
No external refs found!