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  5. Solyc04g078930.4.1

Solyc04g078930.4.1 (AMY1, ATAMY1, Solyc04g078930)


Aliases : AMY1, ATAMY1, Solyc04g078930

Description : alpha amylase


Gene families : OG0000515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000515_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g078930.4.1
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00183740 AMY2, ATAMY2,... Carbohydrate metabolism.starch... 0.03 OrthoFinder output from all 47 species
Adi_g021932 AMY3, ATAMY3 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene69140.t1 AMY1, ATAMY1,... alpha amylase & original description: none 0.04 OrthoFinder output from all 47 species
Gb_30448 AMY1, ATAMY1 alpha amylase 0.02 OrthoFinder output from all 47 species
LOC_Os06g49970.2 AMY1, ATAMY1,... alpha amylase 0.04 OrthoFinder output from all 47 species
Lfl_g24732 AMY1, ATAMY1 alpha amylase & original description: none 0.04 OrthoFinder output from all 47 species
MA_217935g0010 AMY1, ATAMY1 alpha amylase 0.06 OrthoFinder output from all 47 species
Msp_g00704 AMY3, ATAMY3 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0004556 alpha-amylase activity IEA Interproscan
MF GO:0005509 calcium ion binding IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0004866 endopeptidase inhibitor activity IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0030414 peptidase inhibitor activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0061134 peptidase regulator activity IEP HCCA
MF GO:0061135 endopeptidase regulator activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
InterPro domains Description Start Stop
IPR012850 A-amylase_bs_C 346 404
IPR006047 Glyco_hydro_13_cat_dom 34 190
No external refs found!