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  5. Solyc04g078860.4.1

Solyc04g078860.4.1 (ATGLR2.9, GLR2.9,...)


Aliases : ATGLR2.9, GLR2.9, Solyc04g078860

Description : ligand-gated cation channel (GLR)


Gene families : OG0000075 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g078860.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00140120 GLR2.7,... Solute transport.channels.GLR ligand-gated cation channel 0.03 OrthoFinder output from all 47 species
AMTR_s00019p00178550 GLR2.1,... Solute transport.channels.GLR ligand-gated cation channel 0.03 OrthoFinder output from all 47 species
AMTR_s00019p00180760 GLR2.3,... Solute transport.channels.GLR ligand-gated cation channel 0.02 OrthoFinder output from all 47 species
AMTR_s00019p00182440 GLR2.8,... Solute transport.channels.GLR ligand-gated cation channel 0.03 OrthoFinder output from all 47 species
AMTR_s00019p00182630 GLR2.7,... Solute transport.channels.GLR ligand-gated cation channel 0.04 OrthoFinder output from all 47 species
AT2G24720 GLR2.2, ATGLR2.2 glutamate receptor 2.2 0.06 OrthoFinder output from all 47 species
AT2G29100 ATGLR2.9, GLR2.9 glutamate receptor 2.9 0.09 OrthoFinder output from all 47 species
AT2G29120 GLR2.7, ATGLR2.7 glutamate receptor 2.7 0.09 OrthoFinder output from all 47 species
AT5G11180 ATGLR2.6, GLR2.6 glutamate receptor 2.6 0.05 OrthoFinder output from all 47 species
AT5G11210 GLR2.5, ATGLR2.5 glutamate receptor 2.5 0.05 OrthoFinder output from all 47 species
AT5G27100 GLR2.1, ATGLR2.1 glutamate receptor 2.1 0.07 OrthoFinder output from all 47 species
AT5G48400 ATGLR1.2, GLR1.2 Glutamate receptor family protein 0.06 OrthoFinder output from all 47 species
AT5G48410 ATGLR1.3, GLR1.3 glutamate receptor 1.3 0.04 OrthoFinder output from all 47 species
Ala_g14321 GLR2.7, ATGLR2.7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14362 GLUR3, GLR3.4, ATGLR3.4 ligand-gated cation channel *(GLR) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g25251 ATGLR3.1, GLR2,... ligand-gated cation channel *(GLR) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g21565 GLUR3, GLR3.4, ATGLR3.4 ligand-gated cation channel *(GLR) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene02193.t1 GLR3.3,... ligand-gated cation channel *(GLR) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene41864.t1 ATGLR3.5, GLR6,... ligand-gated cation channel *(GLR) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene49369.t1 ATGLR3.5, GLR6,... ligand-gated cation channel *(GLR) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene49371.t1 ATGLR3.5, GLR6,... ligand-gated cation channel *(GLR) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene54272.t2 GLUR3, GLR3.4,... ligand-gated cation channel *(GLR) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene63337.t1 GLR3.3,... ligand-gated cation channel *(GLR) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene65110.t2 GLR3.3,... ligand-gated cation channel *(GLR) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0038.g026158 ATGLR3.1, GLR2,... ligand-gated cation channel *(GLR) & original... 0.02 OrthoFinder output from all 47 species
Cba_g32439 GLR3.6, ATGLR3.6 ligand-gated cation channel *(GLR) & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021569.4 No alias Glutamate receptor 3.1 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
GSVIVT01014251001 GLR2.8, ATGLR2.8 Solute transport.channels.GLR ligand-gated cation channel 0.04 OrthoFinder output from all 47 species
GSVIVT01022297001 GLR3.6, ATGLR3.6 Solute transport.channels.GLR ligand-gated cation channel 0.03 OrthoFinder output from all 47 species
GSVIVT01033121001 GLR2.7, ATGLR2.7 Solute transport.channels.GLR ligand-gated cation channel 0.04 OrthoFinder output from all 47 species
GSVIVT01033137001 GLR2.8, ATGLR2.8 Solute transport.channels.GLR ligand-gated cation channel 0.12 OrthoFinder output from all 47 species
Gb_06329 ATGLR3.5, GLR6, GLR3.5 ligand-gated cation channel (GLR) 0.03 OrthoFinder output from all 47 species
Gb_16131 ATGLR2.9, GLR2.9 ligand-gated cation channel (GLR) 0.03 OrthoFinder output from all 47 species
Gb_26917 GLR2.7, ATGLR2.7 ligand-gated cation channel (GLR) 0.03 OrthoFinder output from all 47 species
Gb_28362 GLUR3, GLR3.4, ATGLR3.4 ligand-gated cation channel (GLR) 0.02 OrthoFinder output from all 47 species
Gb_39754 GLR3.3, ATGLR3.3 ligand-gated cation channel (GLR) 0.05 OrthoFinder output from all 47 species
LOC_Os02g54640.1 ATGLR2.9,... ligand-gated cation channel (GLR) 0.02 OrthoFinder output from all 47 species
MA_10427025g0010 ATGLR3.5, GLR6, GLR3.5 ligand-gated cation channel (GLR) 0.02 OrthoFinder output from all 47 species
MA_10434521g0010 GLR2.1, ATGLR2.1 ligand-gated cation channel (GLR) 0.03 OrthoFinder output from all 47 species
MA_43501g0010 GLR3.3, ATGLR3.3 ligand-gated cation channel (GLR) 0.03 OrthoFinder output from all 47 species
Pnu_g17572 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015510 GLUR3, GLR3.4, ATGLR3.4 ligand-gated cation channel *(GLR) & original... 0.02 OrthoFinder output from all 47 species
Sam_g23577 No alias ligand-gated cation channel *(GLR) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g34506 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo166047 GLR3.3, ATGLR3.3 Solute transport.channels.GLR ligand-gated cation channel 0.02 OrthoFinder output from all 47 species
Solyc06g063180.3.1 GLR2.8,... ligand-gated cation channel (GLR) 0.04 OrthoFinder output from all 47 species
Solyc06g063190.3.1 GLR2.8,... ligand-gated cation channel (GLR) 0.03 OrthoFinder output from all 47 species
Solyc06g063200.2.1 GLR2.8,... ligand-gated cation channel (GLR) 0.05 OrthoFinder output from all 47 species
Solyc06g063210.3.1 GLR2.8,... ligand-gated cation channel (GLR) 0.04 OrthoFinder output from all 47 species
Zm00001e013023_P001 ATGLR3.5, GLR6,... ligand-gated cation channel (GLR) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0015276 ligand-gated monoatomic ion channel activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001828 ANF_lig-bd_rcpt 66 408
IPR001320 Iontro_rcpt_C 806 816
IPR001638 Solute-binding_3/MltF_N 497 805
No external refs found!