Solyc04g078850.4.1 (Solyc04g078850)


Aliases : Solyc04g078850

Description : Protein DCL, chloroplastic OS=Solanum lycopersicum (sp|q42463|dcl_sollc : 374.0)


Gene families : OG0001145 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001145_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g078850.4.1
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00091p00170630 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT3G46630 No alias Protein of unknown function (DUF3223) 0.02 OrthoFinder output from all 47 species
Aob_g07047 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_04575 No alias Protein DCL homolog, chloroplastic OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os02g52744.1 LOC_Os02g52744 Protein DCL, chloroplastic OS=Solanum lycopersicum... 0.03 OrthoFinder output from all 47 species
LOC_Os08g21700.1 LOC_Os08g21700 Protein DCL, chloroplastic OS=Solanum lycopersicum... 0.05 OrthoFinder output from all 47 species
Pnu_g09324 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000643_P001 Zm00001e000643 Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e023814_P002 Zm00001e023814 Protein DCL, chloroplastic OS=Solanum lycopersicum... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006771 riboflavin metabolic process IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009231 riboflavin biosynthetic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
BP GO:0042727 flavin-containing compound biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!