- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : SLY1, Solyc04g078390
Description : SLY-type gibberellin signal transducer. component F-box of SCF E3 ubiquitin ligase complex. component FBX of SCF E3 ubiquitin ligase complex
Gene families : OG0001049 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001049_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc04g078390.3.1 | |
| Cluster | HCCA: Cluster_39 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Aev_g04411 | SLY1 | substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os04g33820.1 | LOC_Os04g33820 | Probable F-box protein At2g36090 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os11g05660.1 | LOC_Os11g05660 | Probable F-box protein At2g36090 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os12g06030.1 | LOC_Os12g06030 | Probable F-box protein At2g36090 OS=Arabidopsis thaliana... | 0.05 | OrthoFinder output from all 47 species | |
| MA_119267g0010 | SLY1 | SLY-type gibberellin signal transducer. component F-box... | 0.07 | OrthoFinder output from all 47 species | |
| MA_76187g0010 | No alias | SLY-type gibberellin signal transducer. component F-box... | 0.03 | OrthoFinder output from all 47 species | |
| MA_960720g0010 | No alias | SLY-type gibberellin signal transducer. component F-box... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g33760 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Solyc10g083230.1.1 | Solyc10g083230 | Probable F-box protein At2g36090 OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e000792_P001 | SLY2, Zm00001e000792 | SLY-type gibberellin signal transducer. component F-box... | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e009127_P001 | Zm00001e009127 | Probable F-box protein At2g36090 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | HCCA |
| BP | GO:0007034 | vacuolar transport | IEP | HCCA |
| MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
| BP | GO:0046907 | intracellular transport | IEP | HCCA |
| BP | GO:0051641 | cellular localization | IEP | HCCA |
| BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001810 | F-box_dom | 82 | 121 |
| No external refs found! |