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  5. Solyc04g074040.3.1

Solyc04g074040.3.1 (SC35, ATSC35,...)


Aliases : SC35, ATSC35, At-SC35, Solyc04g074040

Description : Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana (sp|q9fmg4|sc35_arath : 174.0)


Gene families : OG0001818 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001818_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g074040.3.1
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AT5G64200 SC35, ATSC35, At-SC35 ortholog of human splicing factor SC35 0.05 OrthoFinder output from all 47 species
Adi_g014953 SC35, ATSC35, At-SC35 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060586 SC35, ATSC35, At-SC35 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g082445 SC35, ATSC35, At-SC35 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g08909 SC35, ATSC35, At-SC35 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene43585.t1 SC35, ATSC35,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0333.g065432 SC35, ATSC35, At-SC35 not classified & original description: CDS=1-1344 0.03 OrthoFinder output from all 47 species
Ceric.09G070800.1 SC35, ATSC35,... not classified & original description: pacid=50587641... 0.02 OrthoFinder output from all 47 species
Dcu_g14869 SC35, ATSC35, At-SC35 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g18685 SC35, ATSC35, At-SC35 not classified & original description: none 0.05 OrthoFinder output from all 47 species
LOC_Os08g37960.1 SC35, ATSC35,... Serine/arginine-rich splicing factor SC35 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g07538 SC35, ATSC35, At-SC35 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10426661g0020 SC35, ATSC35, At-SC35 Serine/arginine-rich splicing factor SC35 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Mp3g22400.1 SC35, ATSC35, At-SC35 Serine/arginine-rich splicing factor SC35 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g42681 SC35, ATSC35, At-SC35 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g09240 SC35, ATSC35, At-SC35 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03028 SC35, ATSC35, At-SC35 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g11583 SC35, ATSC35, At-SC35 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013496 SC35, ATSC35, At-SC35 not classified & original description: CDS=98-997 0.03 OrthoFinder output from all 47 species
Sam_g24289 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g08780 SC35, ATSC35, At-SC35 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g47405 SC35, ATSC35, At-SC35 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g03810 SC35, ATSC35, At-SC35 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e035587_P001 SC35, ATSC35,... Serine/arginine-rich splicing factor SC35 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 18 87
No external refs found!