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  5. Solyc04g071480.1.1

Solyc04g071480.1.1 (Solyc04g071480)


Aliases : Solyc04g071480

Description : no hits & (original description: none)


Gene families : OG0000221 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000221_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g071480.1.1
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00097800 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00001p00251380 evm_27.TU.AmTr_v1... Protein BPS1, chloroplastic OS=Arabidopsis thaliana 0.12 OrthoFinder output from all 47 species
AMTR_s00040p00052950 evm_27.TU.AmTr_v1... No description available 0.12 OrthoFinder output from all 47 species
AT1G01550 BPS1 Protein of unknown function (DUF793) 0.08 OrthoFinder output from all 47 species
AT1G18740 No alias Protein of unknown function (DUF793) 0.18 OrthoFinder output from all 47 species
AT1G74450 No alias Protein of unknown function (DUF793) 0.11 OrthoFinder output from all 47 species
AT3G61500 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.03 OrthoFinder output from all 47 species
AT4G01360 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.04 OrthoFinder output from all 47 species
Adi_g002011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g009056 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g009779 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g022669 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g024370 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g051939 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g075560 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g084369 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g03912 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g09153 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g10598 BPS1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24209 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ala_g28173 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01778 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g04972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07595 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g50790 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g54448 BPS1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01622 BPS1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g07741 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g17662 BPS1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17514.t1 Aspi01Gene17514 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene18738.t1 Aspi01Gene18738 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene28412.t1 BPS1, Aspi01Gene28412 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene58350.t1 Aspi01Gene58350 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene64303.t1 Aspi01Gene64303 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene68473.t1 Aspi01Gene68473 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g02508 BPS1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G039400.1 Ceric.04G039400 not classified & original description: pacid=50630851... 0.07 OrthoFinder output from all 47 species
Ceric.1Z027800.1 Ceric.1Z027800 not classified & original description: pacid=50597254... 0.03 OrthoFinder output from all 47 species
Ceric.22G029500.1 Ceric.22G029500 not classified & original description: pacid=50614434... 0.03 OrthoFinder output from all 47 species
Ceric.22G030000.1 Ceric.22G030000 not classified & original description: pacid=50614551... 0.03 OrthoFinder output from all 47 species
Ceric.22G030100.1 BPS1, Ceric.22G030100 not classified & original description: pacid=50615453... 0.05 OrthoFinder output from all 47 species
Ceric.22G032500.1 Ceric.22G032500 not classified & original description: pacid=50614109... 0.02 OrthoFinder output from all 47 species
Ceric.25G006500.1 Ceric.25G006500 not classified & original description: pacid=50594057... 0.04 OrthoFinder output from all 47 species
Ceric.28G062100.1 Ceric.28G062100 not classified & original description: pacid=50570697... 0.04 OrthoFinder output from all 47 species
Ceric.35G009900.1 Ceric.35G009900 not classified & original description: pacid=50581013... 0.05 OrthoFinder output from all 47 species
Dac_g13361 BPS1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22106 BPS1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02475 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g19319 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g23107 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
GSVIVT01019411001 ROH1 No description available 0.02 OrthoFinder output from all 47 species
Gb_06674 No alias no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Gb_18309 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_22841 No alias Protein BPS1, chloroplastic OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Gb_22842 No alias Protein BPS1, chloroplastic OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os02g01930.1 ROH1, LOC_Os02g01930 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os11g06440.1 LOC_Os11g06440 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
Len_g16261 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g05382 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g38463 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_11152g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_123240g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_130577g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_16561g0010 No alias Protein BPS1, chloroplastic OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_575g0010 No alias UPF0496 protein 4 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
Msp_g08592 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g11031 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Msp_g18667 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g35676 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g36211 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g48226 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g48320 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g01034 BPS1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g01945 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g01948 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g16018 BPS1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g23240 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30449 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g09452 BPS1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g12102 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Pir_g21991 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g23868 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g24841 BPS1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g00919 BPS1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18358 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo440489 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc08g081520.1.1 ROH1, Solyc08g081520 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Spa_g07215 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g09588 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g18331 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g25384 BPS1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g38799 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g02494 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e009073_P001 Zm00001e009073 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Zm00001e024656_P001 Zm00001e024656 no hits & (original description: none) 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR008511 ROH1-like 1 382
No external refs found!