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  5. Solyc04g064570.3.1

Solyc04g064570.3.1 (Solyc04g064570)


Aliases : Solyc04g064570

Description : Sdo1 LSU processome maturation factor


Gene families : OG0005672 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005672_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Solyc04g064570.3.1
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00022960 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01010010001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
MA_10434374g0010 No alias Sdo1 LSU processome maturation factor 0.04 OrthoFinder output from all 47 species
Smo130273 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR018978 SDO1/SBDS_central 110 227
IPR019783 SDO1/SBDS_N 16 102
No external refs found!