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Aliases : EMB2453, ATPPR5, Solyc04g054270
Description : Pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic OS=Oryza sativa subsp. japonica (sp|a3abe1|ppr5_orysj : 606.0)
Gene families : OG0002119 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002119_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc04g054270.4.1 | |
| Cluster | HCCA: Cluster_133 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00045p00075400 | EMB2750,... | Pentatricopeptide repeat-containing protein At3g06430,... | 0.03 | OrthoFinder output from all 47 species | |
| AT3G06430 | EMB2750 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| AT3G53170 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| AT4G39620 | EMB2453, ATPPR5 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.15 | OrthoFinder output from all 47 species | |
| AT5G48730 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0174.g055903 | EMB2453, ATPPR5 | not classified & original description: CDS=133-1563 | 0.06 | OrthoFinder output from all 47 species | |
| Dcu_g02809 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g08087 | EMB2453, ATPPR5 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g05904 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01017677001 | EMB2750 | Pentatricopeptide repeat-containing protein At3g06430,... | 0.09 | OrthoFinder output from all 47 species | |
| GSVIVT01022204001 | EMB2453, ATPPR5 | Pentatricopeptide repeat-containing protein At4g39620,... | 0.07 | OrthoFinder output from all 47 species | |
| GSVIVT01032162001 | No alias | Pentatricopeptide repeat-containing protein At3g53170... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_00230 | No alias | Pentatricopeptide repeat-containing protein At3g06430,... | 0.09 | OrthoFinder output from all 47 species | |
| Gb_36199 | EMB2453, ATPPR5 | Pentatricopeptide repeat-containing protein At4g39620,... | 0.09 | OrthoFinder output from all 47 species | |
| LOC_Os02g51480.1 | EMB2453, ATPPR5,... | Pentatricopeptide repeat-containing protein PPR5... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os03g02430.1 | LOC_Os03g02430 | Pentatricopeptide repeat-containing protein At3g53170... | 0.08 | OrthoFinder output from all 47 species | |
| LOC_Os06g07550.1 | LOC_Os06g07550 | Pentatricopeptide repeat-containing protein At5g48730,... | 0.06 | OrthoFinder output from all 47 species | |
| Len_g15301 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| MA_10431478g0010 | No alias | Pentatricopeptide repeat-containing protein At5g48730,... | 0.02 | OrthoFinder output from all 47 species | |
| MA_12518g0010 | EMB2453, ATPPR5 | Pentatricopeptide repeat-containing protein PPR5... | 0.02 | OrthoFinder output from all 47 species | |
| MA_793801g0010 | No alias | Pentatricopeptide repeat-containing protein At3g06430,... | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g07398 | EMB2453, ATPPR5 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g16720 | EMB2453, ATPPR5 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g30371 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g11535 | EMB2453, ATPPR5 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0066.g016075 | No alias | not classified & original description: CDS=33-1412 | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0080.g017959 | EMB2453, ATPPR5 | not classified & original description: CDS=1-1101 | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e000106_P001 | Zm00001e000106 | Pentatricopeptide repeat-containing protein At3g53170... | 0.01 | OrthoFinder output from all 47 species | |
| Zm00001e023883_P001 | EMB2453, ATPPR5,... | Pentatricopeptide repeat-containing protein PPR5,... | 0.09 | OrthoFinder output from all 47 species | |
| Zm00001e031052_P001 | Zm00001e031052 | Pentatricopeptide repeat-containing protein At5g48730,... | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | HCCA |
| MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| No external refs found! |