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  5. Solyc04g050760.4.1

Solyc04g050760.4.1 (Solyc04g050760)


Aliases : Solyc04g050760

Description : protein factor U11-48K of U11 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0006105 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006105_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g050760.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00178860 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U12-type-intron-specific... 0.04 OrthoFinder output from all 47 species
AT3G04160 No alias unknown protein; Has 1711 Blast hits to 1353 proteins in... 0.03 OrthoFinder output from all 47 species
Aev_g24720 No alias component *(U11-48K) of U11 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Als_g05722 No alias component *(U11-48K) of U11 snRNP complex & original... 0.05 OrthoFinder output from all 47 species
Aob_g13397 No alias component *(U11-48K) of U11 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Dcu_g06497 No alias component *(U11-48K) of U11 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Ehy_g19439 No alias component *(U11-48K) of U11 snRNP complex & original... 0.05 OrthoFinder output from all 47 species
Mp1g20950.1 No alias protein factor U11-48K of U11 small nuclear... 0.03 OrthoFinder output from all 47 species
Ore_g25297 No alias component *(U11-48K) of U11 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Zm00001e008466_P001 Zm00001e008466 protein factor U11-48K of U11 small nuclear... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR022776 TRM13/UPF0224_CHHC_Znf_dom 86 110
No external refs found!