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  5. Solyc04g050160.4.1

Solyc04g050160.4.1 (CHR20, ATRX, Solyc04g050160)


Aliases : CHR20, ATRX, Solyc04g050160

Description : Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana (sp|f4hw51|chr20_arath : 238.0)


Gene families : OG0003866 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003866_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g050160.4.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g021727 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g16593 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09035 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.11G086900.1 CHR20, ATRX,... chromatin remodeling factor *(ATRX) & original... 0.03 OrthoFinder output from all 47 species
Cre06.g287950 RAD5 Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Ehy_g09273 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01023393001 CHR20, ATRX Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
LOC_Os10g31970.1 CHR20, ATRX,... chromatin remodeling factor (ATRX) 0.04 OrthoFinder output from all 47 species
Lfl_g03487 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.02 OrthoFinder output from all 47 species
Mp5g21000.1 CHR20, ATRX chromatin remodeling factor (ATRX) 0.03 OrthoFinder output from all 47 species
Msp_g14674 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g00674 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.05 OrthoFinder output from all 47 species
Smo441095 CHR20, ATRX Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Spa_g06181 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!