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  5. Solyc04g049770.4.1

Solyc04g049770.4.1 (Solyc04g049770)


Aliases : Solyc04g049770

Description : component UPF2 of RNA quality control Exon Junction complex


Gene families : OG0003692 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003692_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g049770.4.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00123630 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.05 OrthoFinder output from all 47 species
AT2G39260 No alias binding;RNA binding 0.1 OrthoFinder output from all 47 species
Aev_g28134 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g20588 No alias component *(UPF2) of RNA quality control Exon Junction... 0.06 OrthoFinder output from all 47 species
Als_g03890 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aob_g03621 No alias component *(UPF2) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Aop_g06089 No alias component *(UPF2) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Azfi_s0287.g063161 No alias component *(UPF2) of RNA quality control Exon Junction... 0.07 OrthoFinder output from all 47 species
Ceric.01G002200.1 Ceric.01G002200 component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022080.18 No alias Regulator of nonsense transcripts UPF2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g03185 No alias component *(UPF2) of RNA quality control Exon Junction... 0.06 OrthoFinder output from all 47 species
Dde_g07485 No alias component *(UPF2) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
GSVIVT01016353001 No alias RNA processing.RNA quality control Exon Junction complex... 0.08 OrthoFinder output from all 47 species
Gb_41555 No alias component UPF2 of RNA quality control Exon Junction complex 0.06 OrthoFinder output from all 47 species
LOC_Os02g42040.1 LOC_Os02g42040 component UPF2 of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species
Len_g19045 No alias component *(UPF2) of RNA quality control Exon Junction... 0.07 OrthoFinder output from all 47 species
Lfl_g03486 No alias component *(UPF2) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
MA_10437229g0010 No alias component UPF2 of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species
Nbi_g09684 No alias component *(UPF2) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Ore_g06800 No alias component *(UPF2) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Ppi_g04699 No alias component *(UPF2) of RNA quality control Exon Junction... 0.07 OrthoFinder output from all 47 species
Sam_g36558 No alias component *(UPF2) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Spa_g12526 No alias component *(UPF2) of RNA quality control Exon Junction... 0.06 OrthoFinder output from all 47 species
Tin_g06695 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Zm00001e023044_P004 Zm00001e023044 component UPF2 of RNA quality control Exon Junction complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006476 protein deacetylation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
InterPro domains Description Start Stop
IPR007193 Upf2/Nmd2_C 465 599
IPR003890 MIF4G-like_typ-3 1 133
IPR003890 MIF4G-like_typ-3 151 345
No external refs found!