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  5. Solyc04g015500.3.1

Solyc04g015500.3.1 (Solyc04g015500)


Aliases : Solyc04g015500

Description : B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana (sp|q8l3w1|vrn1_arath : 92.0)


Gene families : OG0004345 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004345_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g015500.3.1
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AT3G18960 No alias AP2/B3-like transcriptional factor family protein 0.02 OrthoFinder output from all 47 species
LOC_Os08g23570.1 LOC_Os08g23570 Putative B3 domain-containing protein Os08g0325100... 0.02 OrthoFinder output from all 47 species
LOC_Os12g40120.1 LOC_Os12g40120 transcription factor (REM) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 66 154
No external refs found!